Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq662 125 6e-24 seq342 111 1e-19 seq97 98.7 8e-16 >seq662 Length=408752 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||||||| || ||| |||||||| |||||||||||| Sbjct 148110 GCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGA 148051 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| |||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 148050 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGG 147991 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | |||| | |||| || Sbjct 147990 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAAC 147931 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 147930 ATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 147882 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||||||| || ||| |||||||| |||||||||||| Sbjct 148338 GCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGA 148279 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| |||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 148278 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGG 148219 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | |||| | |||| || Sbjct 148218 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAAC 148159 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 148158 ATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 148110 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||||||| || ||| |||||||| |||||||||||| Sbjct 148566 GCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGA 148507 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| |||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 148506 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGG 148447 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | |||| | |||| || Sbjct 148446 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAAC 148387 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 148386 ATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 148338 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||||||| || ||| |||||||| |||||||||||| Sbjct 148794 GCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGA 148735 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| |||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 148734 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGG 148675 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | |||| | |||| || Sbjct 148674 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAAC 148615 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 148614 ATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 148566 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| ||| | | |||||||| || ||| |||||||| ||||| || ||| Sbjct 149022 GCCACCTCGCAAACGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATCGGA 148963 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| | |||| |||| || || || ||||| ||||| ||||| ||||| ||||| Sbjct 148962 AAGTGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGG 148903 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | |||| | |||| || Sbjct 148902 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAAC 148843 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct 148842 ATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 148794 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| ||| | || |||||||| || ||| |||||||| |||||||||||| Sbjct 44607 GCCACCTCGCAAGCGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 44548 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| |||| || || |||||||| ||||| ||||| ||||||||||| Sbjct 44547 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 44488 Query 45229 CACACCCTCCTTGTCCGCAATTTT 45252 | || ||||||||| ||| || Sbjct 44487 GATTCCTTCCTTGTCCTGAATCTT 44464 >seq342 Length=642287 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| ||| | | |||||||| || ||| |||||||| |||||||| || Sbjct 475595 GCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 475654 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || || || || || ||||| |||| ||||| |||||||| || Sbjct 475655 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGG 475714 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | |||| | |||| || Sbjct 475715 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAAC 475774 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 |||| ||| |||||||||||||||| ||||| |||||||| ||||| ||||| Sbjct 475775 GTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATACCGCCTC 475830 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| |||| ||| | | ||||||||||| ||| |||||||| |||||||| || Sbjct 493375 GCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 493434 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || || || || || ||||| |||| ||||| |||||||| || Sbjct 493435 AAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 493494 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | |||| | |||| || Sbjct 493495 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAAC 493554 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| |||||||||||||||| ||||| |||||||| ||||| Sbjct 493555 ATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| |||||||| || ||| || |||| || Sbjct 493622 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCGTCCTCT 493681 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 493682 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 493741 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| || |||| || ||||||||| Sbjct 493742 ATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATCGTCTTG 493801 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| |||||||| ||||| Sbjct 493802 CCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||| |||||||| || || ||| |||| ||| Sbjct 547861 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 547920 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 547921 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 547980 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||| || |||| ||| |||||||| Sbjct 547981 ATCTTAGCCTTGACATTGTCTATGGTGTCACTGGCCTCAACATCCAAGGTGATCGTCTTC 548040 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| |||||||| ||||| Sbjct 548041 CCCGTCAAGGTCTTGACAAAGATCTGCAT 548069 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| |||| ||| | | |||||||| || || |||||||| |||||||| || Sbjct 509314 GCCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 509373 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || || || || || ||||| |||| ||||| |||||||| || Sbjct 509374 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTGG 509433 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| ||| || ||| || | | | |||| | |||| || Sbjct 509434 GATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAAC 509493 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||||||||||| ||||| |||||||| ||||| Sbjct 509494 ATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 509541 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||| |||||||| || || || |||| || Sbjct 475842 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 475901 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 475902 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 475961 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| || |||| ||| ||||||||| Sbjct 475962 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476021 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 ||||||| ||||| |||||||| ||||| ||||| Sbjct 476022 CCCGTCAAGGTCTTGACAAAGATCTGCATACCGCCTC 476058 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||| |||||||| || || || |||| || Sbjct 476070 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 476129 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 476130 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 476189 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| || |||| ||| ||||||||| Sbjct 476190 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476249 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 ||||||| ||||| |||||||| ||||| ||||| Sbjct 476250 CCCGTCAAGGTCTTGACAAAGATCTGCATACCGCCTC 476286 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||| |||||||| || || || |||| || Sbjct 476298 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 476357 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 476358 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 476417 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| || |||| ||| ||||||||| Sbjct 476418 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476477 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| |||||||| ||||| Sbjct 476478 CCCGTCAAGGTCTTGACAAAGATCTGCAT 476506 >seq97 Length=1148689 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||| || || || |||| ||| Sbjct 999223 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCC 999282 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| |||| ||||| |||||||| || | || ||||||||| Sbjct 999283 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 999342 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| || |||| |||||||||||| Sbjct 999343 ATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACATCCAAAGTAATCGTCTTG 999402 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| |||||||| ||||| Sbjct 999403 CCCGTCAAGGTCTTGACAAAGATCTGCAT 999431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395028552483448