Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq342 93.3 4e-14 seq97 89.7 5e-13 >seq342 Length=642287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| || |||| || || |||| || ||||| || || ||||||||||| Sbjct 475595 GCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 475654 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||| || || || || ||||| ||||||| || ||||| ||||| || Sbjct 475655 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGG 475714 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | |||||| ||| || || Sbjct 475715 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAAC 475774 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| ||||| || || || || || |||||| Sbjct 475775 GTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 475823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| || |||| || || || | || ||||| || || ||||||||||| Sbjct 493375 GCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 493434 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | | ||| || || || || ||||| ||||||| || ||||| ||||| || Sbjct 493435 AAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 493494 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | |||||| ||| || || Sbjct 493495 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAAC 493554 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| ||||| || || || || || |||||| Sbjct 493555 ATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || || || | || ||||| || || ||||||||||| || || | | | Sbjct 493616 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCG 493675 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || || ||||| ||||||| || ||||| ||||| || |||||||| ||| Sbjct 493676 TCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTG 493735 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | |||||| ||| || || || | ||| | | Sbjct 493736 TCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATC 493795 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| ||||| || || || || || |||||| Sbjct 493796 GTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493831 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| || |||| ||| || |||| || ||||| || || ||||||||||| Sbjct 509314 GCCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 509373 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||| || || || || || || ||||||| || ||||| ||||| || Sbjct 509374 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTGG 509433 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||| || || | | || | ||||| ||| || || Sbjct 509434 GATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAAC 509493 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | |||||||| ||||| || || || || || ||||| ||| Sbjct 509494 ATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 509545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| || || || | || ||||| || || ||||||||||| Sbjct 476280 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476339 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || || || ||||| ||||||| || ||||| ||||| || Sbjct 476340 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476399 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | |||||| ||| || || Sbjct 476400 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476459 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||||||| ||||| || || || || || ||||| ||| Sbjct 476460 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATTGCT 476510 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| || || || | || ||||| || || ||||||||||| Sbjct 475824 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 475883 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || || || ||||| ||||||| || ||||| ||||| || Sbjct 475884 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475943 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | |||||| ||| || || Sbjct 475944 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476003 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| ||||| || || || || || |||||| Sbjct 476004 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 476051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| || || || | || ||||| || || ||||||||||| Sbjct 476052 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476111 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || || || ||||| ||||||| || ||||| ||||| || Sbjct 476112 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476171 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | |||||| ||| || || Sbjct 476172 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476231 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| ||||| || || || || || |||||| Sbjct 476232 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 476279 >seq97 Length=1148689 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| | |||| || || |||| || ||||| || || ||||||||||| Sbjct 999204 GCCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999263 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| | || || ||||| ||||||| || ||||| ||||| || Sbjct 999264 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999323 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | |||||| | | || || Sbjct 999324 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAAC 999383 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||||||| ||||| || || || || || ||||| ||| Sbjct 999384 ATCCAAAGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 999435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| || ||||| | |||| || || |||| || ||||| || || ||||||||| Sbjct 996552 ACATG-CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAA 996610 Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071 || || || | |||||| | || || ||||| ||||||| || ||||| ||| Sbjct 996611 TCCGACAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCG 996670 Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131 || || |||||||| ||||| || || || | | || | |||||| | | Sbjct 996671 GGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCC 996730 Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | || | |||||| || ||||| || || || || || ||||| Sbjct 996731 TCAACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 996783 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| || |||| || || |||| || ||||| || || ||||||||||| Sbjct 998976 GCCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999035 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| | || || ||||| ||||||| || ||||| ||||| || Sbjct 999036 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999095 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | |||||| | | || || Sbjct 999096 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAAC 999155 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || ||||| || || || || || ||||| Sbjct 999156 GTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 999203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506953000556160