Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq342 93.3 4e-14
seq97 89.7 5e-13
>seq342
Length=642287
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| || |||| || || |||| || ||||| || || |||||||||||
Sbjct 475595 GCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 475654
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | ||| || || || || ||||| ||||||| || ||||| ||||| ||
Sbjct 475655 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGG 475714
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || || | | || | |||||| ||| || ||
Sbjct 475715 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAAC 475774
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||||||| ||||| || || || || || ||||||
Sbjct 475775 GTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 475823
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| || |||| || || || | || ||||| || || |||||||||||
Sbjct 493375 GCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 493434
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | | ||| || || || || ||||| ||||||| || ||||| ||||| ||
Sbjct 493435 AAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 493494
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || || | | || | |||||| ||| || ||
Sbjct 493495 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAAC 493554
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||||||| ||||| || || || || || ||||||
Sbjct 493555 ATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493603
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
|||| || || || | || ||||| || || ||||||||||| || || | | |
Sbjct 493616 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCG 493675
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| || || || || ||||| ||||||| || ||||| ||||| || |||||||| |||
Sbjct 493676 TCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTG 493735
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| || || || | | || | |||||| ||| || || || | ||| | |
Sbjct 493736 TCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATC 493795
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||||||| ||||| || || || || || ||||||
Sbjct 493796 GTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493831
Score = 89.7 bits (98), Expect = 5e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| || |||| ||| || |||| || ||||| || || |||||||||||
Sbjct 509314 GCCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 509373
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | ||| || || || || || || ||||||| || ||||| ||||| ||
Sbjct 509374 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTGG 509433
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| ||| || || | | || | ||||| ||| || ||
Sbjct 509434 GATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAAC 509493
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | || | |||||||| ||||| || || || || || ||||| |||
Sbjct 509494 ATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 509545
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | |||| || || || | || ||||| || || |||||||||||
Sbjct 476280 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476339
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||| || || || || ||||| ||||||| || ||||| ||||| ||
Sbjct 476340 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476399
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| || || || | | || | |||||| ||| || ||
Sbjct 476400 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476459
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | || | ||||||||| ||||| || || || || || ||||| |||
Sbjct 476460 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATTGCT 476510
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | |||| || || || | || ||||| || || |||||||||||
Sbjct 475824 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 475883
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||| || || || || ||||| ||||||| || ||||| ||||| ||
Sbjct 475884 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475943
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| || || || | | || | |||||| ||| || ||
Sbjct 475944 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476003
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||||||| ||||| || || || || || ||||||
Sbjct 476004 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 476051
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| | |||| || || || | || ||||| || || |||||||||||
Sbjct 476052 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476111
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||| || || || || ||||| ||||||| || ||||| ||||| ||
Sbjct 476112 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476171
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| || || || | | || | |||||| ||| || ||
Sbjct 476172 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476231
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | ||||||||| ||||| || || || || || ||||||
Sbjct 476232 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 476279
>seq97
Length=1148689
Score = 89.7 bits (98), Expect = 5e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| | |||| || || |||| || ||||| || || |||||||||||
Sbjct 999204 GCCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999263
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | |||||| | || || ||||| ||||||| || ||||| ||||| ||
Sbjct 999264 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999323
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || || | | || | |||||| | | || ||
Sbjct 999324 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAAC 999383
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| | ||| | ||||||||| ||||| || || || || || ||||| |||
Sbjct 999384 ATCCAAAGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 999435
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/233 (68%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011
||||| || ||||| | |||| || || |||| || ||||| || || |||||||||
Sbjct 996552 ACATG-CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAA 996610
Query 143012 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 143071
|| || || | |||||| | || || ||||| ||||||| || ||||| |||
Sbjct 996611 TCCGACAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCG 996670
Query 143072 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGT 143131
|| || |||||||| ||||| || || || | | || | |||||| | |
Sbjct 996671 GGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCC 996730
Query 143132 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| || || | || | |||||| || ||||| || || || || || |||||
Sbjct 996731 TCAACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 996783
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| || |||| || || |||| || ||||| || || |||||||||||
Sbjct 998976 GCCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999035
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | |||||| | || || ||||| ||||||| || ||||| ||||| ||
Sbjct 999036 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999095
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || || | | || | |||||| | | || ||
Sbjct 999096 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAAC 999155
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||| || ||||| || || || || || |||||
Sbjct 999156 GTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 999203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506953000556160
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