Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1090 138 2e-27 seq22 138 2e-27 seq1075 95.1 2e-14 >seq1090 Length=248447 Score = 138 bits (152), Expect = 2e-27 Identities = 370/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||||| |||||||| ||| | |||| || || ||||||| || ||| |||| ||| | Sbjct 61927 TGGGAGATGTACAAGAAGCATGAGGCTTCTTTCTGGACGGCGGAGGAGATCGACCTGGCG 61986 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| | || |||| ||| ||| ||| |||| | || | |||| Sbjct 61987 CAGGACAACAAGGACTGGGTGACGA---TGAACGAAGGCGAGCAGCACTTCGTGAAGCAC 62043 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | |||||||||||||| | || || |||||||| || || || | | ||| Sbjct 62044 GTCTTGGCCTTCTTTGCTGCATCTGAAGGAATCGTACTAGAGAACCTCGCCGCGCAGTTC 62103 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 || ||| || ||||| |||| | || ||||| ||||| ||| || ||| Sbjct 62104 TCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAG 62163 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-GCAACG 125320 ||| | || || || | |||||| |||||||| |||||| || || || | Sbjct 62164 AACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCGGAG 62223 Query 125321 TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380 ||| ||| || || | || ||| |||| ||||| | | | | ||||||| || Sbjct 62224 -AAAGACAGCCTTTTCGATGCCATCCACACCATGCCGGCAGTTCAGCAGAAGGCTCTGTG 62282 Query 125381 GGTGATTCGGTGGATCGA---TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 ||| | | |||||| | ||| || || |||| |||| | ||||||| || Sbjct 62283 GGTTGTGCAGTGGATGAACCGTGA-GAGCAG-CTTCA----CCGAGCGCTTGGTGGCTTT 62336 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGA 125496 || ||||| ||||||||| ||||| ||| | || |||| || |||| ||||| |||| Sbjct 62337 TGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCC-TCTTCTGGCTGAAGA 62395 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 ||||||| || ||||| || ||||| | |||||| | || || || |||||||||| Sbjct 62396 AGCGCGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 62455 Query 125557 TACACTGTGACTTTGC 125572 | ||| |||||||| Sbjct 62456 TGCACGCGGACTTTGC 62471 >seq22 Length=1799166 Score = 138 bits (152), Expect = 2e-27 Identities = 370/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||||| |||||||| ||| | |||| || || ||||| | || ||| |||| ||| | Sbjct 596623 TGGGAGATGTACAAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCTGGCG 596564 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| | || |||| ||| ||| ||| |||| | || | |||| Sbjct 596563 CAGGACAACAAGGACTGGGTGACGA---TGAACGAAGGCGAGCAGCACTTCGTGAAGCAC 596507 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | |||||||||||||| | || ||||||||||| || || || | | ||| Sbjct 596506 GTCTTGGCCTTCTTTGCTGCTTCTGATGGAATCGTGCTGGAGAACCTCGCCGCGCAGTTC 596447 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 || ||| || ||||| |||| | || ||||| ||||| ||| || ||| Sbjct 596446 TCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAG 596387 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-GCAACG 125320 ||| | || || || | |||||| |||||||| |||||| || || || | Sbjct 596386 AACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCGGAG 596327 Query 125321 TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380 ||| ||| || || | || ||| |||| ||||| | | | | ||||||| || Sbjct 596326 -AAAGACAGCCTTTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCTGTG 596268 Query 125381 GGTGATTCGGTGGATCGA---TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 || | | |||||| | ||| || || |||| |||| | ||||||| || Sbjct 596267 GGCTGTGCAGTGGATGAACCGTGA-GAGCAG-CTTCA----CCGAGCGCTTGGTGGCTTT 596214 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGA 125496 || ||||| ||||||||| ||||| ||| | || |||| || |||| ||||| |||| Sbjct 596213 TGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCC-TCTTCTGGCTGAAGA 596155 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 ||||||| || ||||| || ||||| | |||||| | || || || |||||||||| Sbjct 596154 AGCGCGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 596095 Query 125557 TACACTGTGACTTTGC 125572 ||||| |||||||| Sbjct 596094 TACACGCGGACTTTGC 596079 Score = 129 bits (142), Expect = 9e-25 Identities = 368/556 (66%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||||| |||||||| ||| | |||| || || ||||| | || ||| |||| ||| | Sbjct 589121 TGGGAGATGTACAAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCTGGCG 589062 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| | || |||| ||| ||| ||| |||| | || | |||| Sbjct 589061 CAGGACAACAAGGACTGGGTGACGA---TGAACGAAGGCGAGCAGCACTTCGTGAAGCAC 589005 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | |||||||||||||| | || || |||||||| || || || | | ||| Sbjct 589004 GTCTTGGCCTTCTTTGCTGCATCTGACGGAATCGTGCTGGAGAACCTCGCCGCGCAGTTC 588945 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 || ||| || ||||| |||| | || ||||| ||||| ||| || ||| Sbjct 588944 TCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAG 588885 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-GCAACG 125320 ||| | || || || | |||||| |||||||| |||||| || || ||| | Sbjct 588884 AACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCAGAG 588825 Query 125321 TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380 ||| || || || | || ||| |||| ||||| | | | | ||||||| || Sbjct 588824 AAAAG-CAGCCTTTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCTGTG 588766 Query 125381 GGTGATTCGGTGGATCGA---TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 || | | |||||| | ||| || || |||| |||| | ||||||| || Sbjct 588765 GGCTGTGCAGTGGATGAACCGTGA-GAGCAG-CTTCA----CCGAGCGCTTGGTGGCTTT 588712 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGA 125496 || ||||| ||||||||| |||| ||| | || |||| || |||| ||||| |||| Sbjct 588711 TGCTGCCGTGGAGGGCATCCTCTTCAGCGGCTCCTTCTGCGCCC-TCTTCTGGCTGAAGA 588653 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 ||||||| || ||||| || ||||| | |||||| | || || || |||||||||| Sbjct 588652 AGCGCGGCCTGATGCCGGGCCTGACATTCTCCAACGAGCTGATCTCCCGCGACGAGGGCC 588593 Query 125557 TACACTGTGACTTTGC 125572 ||||| |||||||| Sbjct 588592 TACACGCGGACTTTGC 588577 >seq1075 Length=250942 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTT 125486 ||||||| || ||||| || ||||||||| |||| ||| | || |||| || |||| Sbjct 199068 TGGTGGCTTTTGCCGCTGTGGAGGGCATCCTCTTCAGCGGCTGCTTCTGCGCCC-TCTTC 199126 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||| ||||||||||| || ||||| || ||||| | |||||| | || || || Sbjct 199127 TGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCTCCCGC 199186 Query 125547 GACGAGGGCCTACACTGTGACTTTGC 125572 || |||||||| ||| |||||||| Sbjct 199187 GATGAGGGCCTCCACGCGGACTTTGC 199212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740969457730880