Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_004313.1
Length=40149
Score E
Sequences producing significant alignments: (Bits) Value
seq5535 154 4e-33
>seq5535
Length=1768
Score = 154 bits (170), Expect = 4e-33
Identities = 392/581 (67%), Gaps = 24/581 (4%)
Strand=Plus/Plus
Query 37379 ATGAATGAATCCCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGG 37438
||||| |||| |||||||| |||||||||| | ||||||| | | |||||||||||
Sbjct 733 ATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTGG 792
Query 37439 TATCCGCATATTACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCC 37498
| || || | | | ||||||| || ||||| || || || | || |||||
Sbjct 793 TTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCG 852
Query 37499 ATGTTCATTGCACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTC 37558
|||||||| || || | ||||||||||| ||||| || || ||| || || ||||||
Sbjct 853 ATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTTC 912
Query 37559 AACTACTCG-GTAGATGGGCTGATGAA---AACCTTTGGTAAACGCCTGACGCCGTATCA 37614
||||| ||| | | ||| ||| | || | | || | |||||| || | | ||
Sbjct 913 AACTA-TCGCATTGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCA 971
Query 37615 GTGTGAAATGCTGGGGCGT-GTC--GATG-GTAAGCA-----GGTGGCCCACCAGC-CGC 37664
| | | ||| |||||| ||| || | | | || | | | | ||||| |||
Sbjct 972 GGCTAACGCGCTTGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGC 1031
Query 37665 AAATAGCCAATCTAGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGAGATGGCTGGA 37724
|| || || || || ||| | |||||||| ||||| | |||| || ||||||
Sbjct 1032 -CATTGCGAACCTGGTATACAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGT 1090
Query 37725 AGTATCGCGGGCGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGA-TGCGGC 37783
|| || |||||||||||||||||||||||||| || | || ||| | || || ||
Sbjct 1091 TTTACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAATAACTAC-CGTGATTGTGGG 1149
Query 37784 GTTGCCCTGAAACTGGATCTGGTGGCGAATCCGGGACAGCT-TGAACTG--GATCGTCAT 37840
| |||||| | |||||||| | | || | |||| | | | | || | |
Sbjct 1150 AACGGCCTGAAGGTTGATCTGGTAAAGCAGCCTG---AGCTATTAGCCGAAGACGTTTAC 1206
Query 37841 GCCGCCCGTTCCGCAGCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGAC 37900
|| ||| | ||| |||||||| || | |||| || || ||||| || |||||||||
Sbjct 1207 GCAGCCAGAAGCGCGGCGTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGAC 1266
Query 37901 CTGGTGCGCGTTACGCAGATCATTAACGGAGGGCAGAACGG 37941
||| ||| || ||| |||| || ||||| || ||||||
Sbjct 1267 CTGCTGCAGGTGACGAAGATTATCAACGGCGGAACGAACGG 1307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128340433376016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |