Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq5535 154 4e-33 >seq5535 Length=1768 Score = 154 bits (170), Expect = 4e-33 Identities = 392/581 (67%), Gaps = 24/581 (4%) Strand=Plus/Plus Query 37379 ATGAATGAATCCCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGG 37438 ||||| |||| |||||||| |||||||||| | ||||||| | | ||||||||||| Sbjct 733 ATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTGG 792 Query 37439 TATCCGCATATTACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCC 37498 | || || | | | ||||||| || ||||| || || || | || ||||| Sbjct 793 TTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCG 852 Query 37499 ATGTTCATTGCACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTC 37558 |||||||| || || | ||||||||||| ||||| || || ||| || || |||||| Sbjct 853 ATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTTC 912 Query 37559 AACTACTCG-GTAGATGGGCTGATGAA---AACCTTTGGTAAACGCCTGACGCCGTATCA 37614 ||||| ||| | | ||| ||| | || | | || | |||||| || | | || Sbjct 913 AACTA-TCGCATTGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCA 971 Query 37615 GTGTGAAATGCTGGGGCGT-GTC--GATG-GTAAGCA-----GGTGGCCCACCAGC-CGC 37664 | | | ||| |||||| ||| || | | | || | | | | ||||| ||| Sbjct 972 GGCTAACGCGCTTGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGC 1031 Query 37665 AAATAGCCAATCTAGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGAGATGGCTGGA 37724 || || || || || ||| | |||||||| ||||| | |||| || |||||| Sbjct 1032 -CATTGCGAACCTGGTATACAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGT 1090 Query 37725 AGTATCGCGGGCGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGA-TGCGGC 37783 || || |||||||||||||||||||||||||| || | || ||| | || || || Sbjct 1091 TTTACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAATAACTAC-CGTGATTGTGGG 1149 Query 37784 GTTGCCCTGAAACTGGATCTGGTGGCGAATCCGGGACAGCT-TGAACTG--GATCGTCAT 37840 | |||||| | |||||||| | | || | |||| | | | | || | | Sbjct 1150 AACGGCCTGAAGGTTGATCTGGTAAAGCAGCCTG---AGCTATTAGCCGAAGACGTTTAC 1206 Query 37841 GCCGCCCGTTCCGCAGCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGAC 37900 || ||| | ||| |||||||| || | |||| || || ||||| || ||||||||| Sbjct 1207 GCAGCCAGAAGCGCGGCGTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGAC 1266 Query 37901 CTGGTGCGCGTTACGCAGATCATTAACGGAGGGCAGAACGG 37941 ||| ||| || ||| |||| || ||||| || |||||| Sbjct 1267 CTGCTGCAGGTGACGAAGATTATCAACGGCGGAACGAACGG 1307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128340433376016