Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq662 111 1e-19
seq342 111 1e-19
seq97 93.3 3e-14
>seq662
Length=408752
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| ||| | | || || ||||||||||| || || || ||||| ||||||
Sbjct 149023 TGCCACCTCGCAAACGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATCGG 148964
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | || |||| || || || ||||||||| | ||||| || || ||||| |
Sbjct 148963 AAAGTGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAG 148904
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| || || ||| ||| | || ||||| ||||| || |
Sbjct 148903 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAA 148844
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| || ||||| || || || ||||| || || || || || |||||
Sbjct 148843 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148795
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| ||| | || || || ||||||||||| || || || |||||||| |||
Sbjct 44608 TGCCACCTCGCAAGCGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 44549
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | || |||| || || || ||||| ||| | ||||| || || |||||| |
Sbjct 44548 AAAGCGTCCTTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 44489
Query 15255 GAATTCCTTCTTTGTC 15270
| |||||||| |||||
Sbjct 44488 GGATTCCTTCCTTGTC 44473
>seq342
Length=642287
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| |||| ||| | | ||| || |||||||| || || || || |||||||||||
Sbjct 509313 TGCCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG 509372
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | |||| |||| || ||||| ||| | |||| || || |||||| ||
Sbjct 509373 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTG 509432
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| ||| || ||| ||| | |||||||| ||||| || |
Sbjct 509433 GGATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAA 509492
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| ||||| || || || || |||| || || ||||| || |||||
Sbjct 509493 CATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 509541
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||||| ||| | | || || ||||||||||| || || || |||||||||||
Sbjct 475594 TGCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAG 475653
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | |||| |||| || ||||||||| | |||| || || |||||| ||
Sbjct 475654 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 475713
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| || || ||| ||| | || || || || || || |
Sbjct 475714 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 475773
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || ||||| || || || || |||| || || ||||| || ||||||
Sbjct 475774 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 475823
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| |||| ||| | | || || || |||||||| || || || |||||||||||
Sbjct 493374 TGCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493433
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | |||| |||| || ||||||||| | |||| || || |||||| |
Sbjct 493434 AAAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCG 493493
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| || || ||| ||| | || || || || || || |
Sbjct 493494 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAA 493553
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| ||||| || || || || |||| || || ||||| || ||||||
Sbjct 493554 CATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493603
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || ||||| || || || || ||||||||||| || | | |||| ||
Sbjct 547861 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 547920
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || ||||||||| | |||| || || |||||| || || ||||| |||||
Sbjct 547921 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 547980
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | |||||||| || || || ||||| ||||| || || ||
Sbjct 547981 ATCTTAGCCTTGACATTGTCTATGGTGTCACTGGCCTCAACATCCAAGGTGATCGTCTTC 548040
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| || || ||||| || |||||
Sbjct 548041 CCCGTCAAGGTCTTGACAAAGATCTGCAT 548069
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || |||||||| || || || ||||||||||| || | | | |||| |||
Sbjct 493622 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCGTCCTCT 493681
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||||||| | |||| || || |||||| ||| || ||||| |||||
Sbjct 493682 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 493741
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || || || || || || || || || ||
Sbjct 493742 ATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATCGTCTTG 493801
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || ||||| || ||||||
Sbjct 493802 CCCGTCAAGGTCTTGACAAAGATCTGCATA 493831
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || ||||| || || || || ||||||||||| || | | |||| |||
Sbjct 475842 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 475901
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||||||| | |||| || || |||||| ||| || ||||| |||||
Sbjct 475902 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 475961
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || || || || || ||||| || || ||
Sbjct 475962 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476021
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || ||||| || ||||||
Sbjct 476022 CCCGTCAAGGTCTTGACAAAGATCTGCATA 476051
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || ||||| || || || || ||||||||||| || | | |||| |||
Sbjct 476070 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 476129
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||||||| | |||| || || |||||| ||| || ||||| |||||
Sbjct 476130 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 476189
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || || || || || ||||| || || ||
Sbjct 476190 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476249
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || ||||| || ||||||
Sbjct 476250 CCCGTCAAGGTCTTGACAAAGATCTGCATA 476279
>seq97
Length=1148689
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||| |||| ||| | | || || |||||||| || || || || |||||||||||
Sbjct 998975 TGCCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG 999034
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | ||||||| || || ||||||||| | |||| || || |||||| |
Sbjct 999035 AAAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCG 999094
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| || || ||| ||| | || || || || || || |
Sbjct 999095 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAA 999154
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || ||||| || || ||||| |||| || || ||||| || |||||
Sbjct 999155 CGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 999203
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || ||||||||||| || | | |||||||
Sbjct 996575 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCGTCTTCC 996634
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || ||||||||| | |||| || || |||||| || || ||||| |||||
Sbjct 996635 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 996694
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || || || || || ||||| || || |||
Sbjct 996695 ATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACGTCCAAGGTGATCGTCTTA 996754
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| || || ||||| || |||||
Sbjct 996755 CCCGTCAAGGTCTTGACAAAGATCTGCAT 996783
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || ||||||||||| || | | |||||||
Sbjct 999223 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCC 999282
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || ||||||||| | |||| || || |||||| || || ||||| |||||
Sbjct 999283 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 999342
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || || || || || || ||||| || ||||| || ||
Sbjct 999343 ATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACATCCAAAGTAATCGTCTTG 999402
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| || || ||||| || |||||
Sbjct 999403 CCCGTCAAGGTCTTGACAAAGATCTGCAT 999431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362136436596408
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