Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq662 111 1e-19 seq342 111 1e-19 seq97 93.3 3e-14 >seq662 Length=408752 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| ||| | | || || ||||||||||| || || || ||||| |||||| Sbjct 149023 TGCCACCTCGCAAACGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATCGG 148964 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || |||| || || || ||||||||| | ||||| || || ||||| | Sbjct 148963 AAAGTGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAG 148904 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || || ||| ||| | || ||||| ||||| || | Sbjct 148903 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAA 148844 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || ||||| || || || ||||| || || || || || ||||| Sbjct 148843 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| ||| | || || || ||||||||||| || || || |||||||| ||| Sbjct 44608 TGCCACCTCGCAAGCGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 44549 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || |||| || || || ||||| ||| | ||||| || || |||||| | Sbjct 44548 AAAGCGTCCTTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 44489 Query 15255 GAATTCCTTCTTTGTC 15270 | |||||||| ||||| Sbjct 44488 GGATTCCTTCCTTGTC 44473 >seq342 Length=642287 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| ||| | | ||| || |||||||| || || || || ||||||||||| Sbjct 509313 TGCCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG 509372 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| |||| || ||||| ||| | |||| || || |||||| || Sbjct 509373 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTG 509432 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| ||| || ||| ||| | |||||||| ||||| || | Sbjct 509433 GGATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAA 509492 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||||| || || || || |||| || || ||||| || ||||| Sbjct 509493 CATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 509541 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| ||| | | || || ||||||||||| || || || ||||||||||| Sbjct 475594 TGCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAG 475653 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| |||| || ||||||||| | |||| || || |||||| || Sbjct 475654 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 475713 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || || ||| ||| | || || || || || || | Sbjct 475714 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 475773 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || || || |||| || || ||||| || |||||| Sbjct 475774 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 475823 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| ||| | | || || || |||||||| || || || ||||||||||| Sbjct 493374 TGCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493433 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | |||| |||| || ||||||||| | |||| || || |||||| | Sbjct 493434 AAAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCG 493493 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || || ||| ||| | || || || || || || | Sbjct 493494 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAA 493553 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||| || || || || |||| || || ||||| || |||||| Sbjct 493554 CATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 493603 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || ||||||||||| || | | |||| || Sbjct 547861 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 547920 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | |||| || || |||||| || || ||||| ||||| Sbjct 547921 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 547980 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | |||||||| || || || ||||| ||||| || || || Sbjct 547981 ATCTTAGCCTTGACATTGTCTATGGTGTCACTGGCCTCAACATCCAAGGTGATCGTCTTC 548040 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| || ||||| Sbjct 548041 CCCGTCAAGGTCTTGACAAAGATCTGCAT 548069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||||||||| || | | | |||| ||| Sbjct 493622 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCGTCCTCT 493681 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| || || |||||| ||| || ||||| ||||| Sbjct 493682 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 493741 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || || || || || || || || Sbjct 493742 ATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATCGTCTTG 493801 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 493802 CCCGTCAAGGTCTTGACAAAGATCTGCATA 493831 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || ||||||||||| || | | |||| ||| Sbjct 475842 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 475901 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| || || |||||| ||| || ||||| ||||| Sbjct 475902 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 475961 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || || || ||||| || || || Sbjct 475962 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476021 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 476022 CCCGTCAAGGTCTTGACAAAGATCTGCATA 476051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || ||||||||||| || | | |||| ||| Sbjct 476070 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCT 476129 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| || || |||||| ||| || ||||| ||||| Sbjct 476130 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 476189 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || || || ||||| || || || Sbjct 476190 ATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTG 476249 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 476250 CCCGTCAAGGTCTTGACAAAGATCTGCATA 476279 >seq97 Length=1148689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| ||| | | || || |||||||| || || || || ||||||||||| Sbjct 998975 TGCCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG 999034 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | ||||||| || || ||||||||| | |||| || || |||||| | Sbjct 999035 AAAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCG 999094 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || || ||| ||| | || || || || || || | Sbjct 999095 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAA 999154 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || ||||| || || ||||| |||| || || ||||| || ||||| Sbjct 999155 CGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCAT 999203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | | ||||||| Sbjct 996575 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCGTCTTCC 996634 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | |||| || || |||||| || || ||||| ||||| Sbjct 996635 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 996694 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || || || ||||| || || ||| Sbjct 996695 ATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACGTCCAAGGTGATCGTCTTA 996754 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| || ||||| Sbjct 996755 CCCGTCAAGGTCTTGACAAAGATCTGCAT 996783 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | | ||||||| Sbjct 999223 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCC 999282 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | |||| || || |||||| || || ||||| ||||| Sbjct 999283 AACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGG 999342 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || || || ||||| || ||||| || || Sbjct 999343 ATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACATCCAAAGTAATCGTCTTG 999402 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| || ||||| Sbjct 999403 CCCGTCAAGGTCTTGACAAAGATCTGCAT 999431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362136436596408