Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq323 279 1e-69 seq837 194 4e-44 seq278 132 1e-25 >seq323 Length=666680 Score = 279 bits (308), Expect = 1e-69 Identities = 675/1009 (67%), Gaps = 30/1009 (3%) Strand=Plus/Minus Query 363334 AATGCGGAAGTTTTCGATGACGTTATCAATTATGAGAAGGATCTCGAGTATGATATTTTC 363393 |||||||||| ||| || | | ||| | || ||| ||| | | || || |||| Sbjct 307059 AATGCGGAAGCTTTGGACCAAGCCATCGACTACAAGAGGGACTTGGGCTACGACTATTTC 307000 Query 363394 GGATATAAGACGATGGAGAAATCCTACCTATCT-CGTATCAATGGTGATATTGTTGAACG 363452 |||| ||||| ||||||| |||||||| ||| ||| | |||| | ||||| || | Sbjct 306999 GGATTCAAGACCCTGGAGAAGTCCTACCT-TCTACGTGTGCATGGCAAGATTGTGGAGAG 306941 Query 363453 CCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGC 363512 || ||||| ||| | ||||| | || || || || ||| | || ||||| Sbjct 306940 GCCACAGCACATGATCATGCGCGCCGCCTGCGGAATTCACATGGGGGACCTCGAAGCCGC 306881 Query 363513 GATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATG 363570 | || || ||| | ||| | || || || ||||| || || ||||| || | Sbjct 306880 ACTGGAGACGTATGA-CTTG-ATGTCGCGGAAGTTCTTCACCCATGCGACGCCGACTCTC 306823 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | ||||||||| |||| || ||||||||||| || ||||| || || || || |||| Sbjct 306822 TTCAATGCTGGGACTCCGAAGCCACAGATGTCCTCCTGCTTCCTGCTGAAGTTGCAGGAT 306763 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || ||| |||||||||| |||||| || ||| | || ||| || |||||| ||| Sbjct 306762 GACAGCATTGAGGGTATCTATGACACCCTGAAGCAGTGCGCTTCCATCTCCAAGTCTGCC 306703 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAA-CAGTTACATTCGCGGCAC 363749 || |||||||| || | ||| || || ||||| ||| | |||||||||||||| Sbjct 306702 GGTGGAATTGGCGTGGCAATCTCGAACGTGCGTGC-CAGCGGCTCCTACATTCGCGGCAC 306644 Query 363750 AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 || || ||||| | || |||||||| ||| || || | || |||||||| Sbjct 306643 GAACGGCCACAGCAATGGCATCGTACCCATGCTCCGTAATTTCAACGAGACGGCGAGGTA 306584 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 || || ||||| || || ||| | || || | || |||||||| || ||||| || Sbjct 306583 TGTGGATCAGGGCGGCGGCAAGAGGAAGGGCTCATTCGCTATGTACCTGGAGCCCTGGCA 306524 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 ||| || ||||||| || || ||||| || || ||| || || ||||| |||||| Sbjct 306523 TGCGAATGTTTTTGACTTCCTGGAGCTTCGCAAGAACCACGGCAAGGAGGAGCAGCGTGC 306464 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGG 363989 || ||||| ||||| | || ||| | | || | || |||||||| || ||| Sbjct 306463 CCGCGATCTCTTCTACGGGCTCTGGATCCCGGATCTCTTCATGAAGCGGGTCAAGGACAA 306404 Query 363990 TAAGAATTGGTCACTCTTTTGCCCACACGA-----ATGTCCA-------------GGTCT 364031 || | ||| ||||||| ||||| |||| | | | | || || Sbjct 306403 CCAGGACTGGACACTCTTCTGCCCGAACGAGGCCTACGACGAGGAGAGCGGTAAGGGGCT 306344 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT-GAATCGGAGGGAA 364090 ||| | ||||| | || | | | || ||| | | | | || |||||| | Sbjct 306343 CATGGATTTCTGGGGCCAGGAGTTCGAGGAACTGTAC-ACACGCCTGGAGAGGGAGGGCA 306285 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 ||| || |||||| | |||||| |||| ||||| |||| | || || ||||| | Sbjct 306284 AGGGCCGCAAGACAGTCAAGGCACAGCAGCTTTGGTTCCGCATCCTCGAGTCTCAGATGG 306225 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAG 364209 ||||||| || || || ||| |||||||||| | ||| ||||| ||||||||||||||| Sbjct 306224 AGACAGGCACGCCTTACATGCTGTACAAAGA-CCATGCGAACCGGAAGTCCAACCAGCAG 306166 Query 364210 CACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCC 364269 |||| || || || || |||||| ||||| ||||| ||||| ||||| || Sbjct 306165 AACCTCGGCACGATCCATTGCTCCAACCTTTGTACAGAGATCATTGAGTACACTGCGAAG 306106 Query 364270 GACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 || ||| || || || ||||| || || || || | || || |||| Sbjct 306105 GATGAGGTAGCAGTGTGCAACCTCGCCTCCATTTCGTTGCCAGCCTTTG 306057 >seq837 Length=329666 Score = 194 bits (214), Expect = 4e-44 Identities = 556/838 (66%), Gaps = 43/838 (5%) Strand=Plus/Plus Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 || |||||| ||| |||||||| || || ||||| ||||| ||||| | || Sbjct 85854 ATCTCCAAGTCTGCCGGCGGAATCGGCGTGGCGATCTCGAATGTGCGTGCT--GGCGGGT 85911 Query 363736 --TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTG 363793 |||||||| ||||| || || ||||| || || |||||||| || || Sbjct 85912 CGTACATTCGTGGCACCAATGGCCACAGCAATGGCCTCGTGCCCATGCTCCGGAACTTCA 85971 Query 363794 ACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGT 363853 || | || ||| |||||||||| ||||||||||||||| | || || | || || |||| Sbjct 85972 ACGAGACGGCGCGGTACGTCGATCAGGGTGGAGGAAAGAGGAAGGGCTCTTTCGCGATGT 86031 Query 363854 ATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGA 363912 | || |||||| || || ||| | || || || | ||||| |||| || ||| || Sbjct 86032 ACCTGGAGCCTTGGCACGCAGATGTCTTCGACTTGTTGGAGCTGAGGAAGAATCAC-GGC 86090 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || ||||| ||| || || ||||| ||||||| || ||| || | || | || ||| Sbjct 86091 AAGGAGGAGCAGCGCGCCCGGGATCTCTTCTATGGGCTCTGGATTCCGGATCTCTTCATG 86150 Query 363973 AAGCGCGTGGAGG-CAGGTAAGAATTGGTCACTCTTTTGCCCACACGA-----ATGTCCA 364026 | || || ||| || | | ||||| | |||||||||||| |||| | | | | Sbjct 86151 ACTCGGGTCAAGGACAACT-TGGATTGGACTCTCTTTTGCCCAAACGAGGCCTACGACGA 86209 Query 364027 -------------GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAA 364073 || || |||| |||||| || || | | || || ||| | Sbjct 86210 GACAAGTGGTAAGGGGCTAATGGATGCATGGGGCGAGGAGTTCGAGGCGCTGTAC-ACGC 86268 Query 364074 GTAT-GAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA 364132 | | || |||||| |||| || ||| | |||||| |||| ||||| || Sbjct 86269 GCCTGGAGAGGGAGGGCAAGGGACGGAAGGTGGTCAAGGCACAGCAGCTTTGGTTCCGCA 86328 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGA-TTCGTGCAAC 364191 | | || |||||||| ||||| || || || || ||| ||||||| || || | ||| Sbjct 86329 TTCTCGAGTCGCAGATGGAGACGGGCACGCCTTACATGCTGTACAAGGACCACGCG-AAC 86387 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATT 364251 |||||||||||||||||| | || || ||||| || |||||| ||||| || ||| Sbjct 86388 CGCAAGTCCAACCAGCAGAATCTCGGCACAATCCACTGCTCCAACCTTTGTACAGAAATT 86447 Query 364252 ATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 ||||| ||||| || || ||| || || || ||||| || || ||| | | || Sbjct 86448 ATTGAGTACACTGCGAAGGATGAGGTGGCAGTGTGCAACCTGGCCTCCATCTCCTTACCA 86507 Query 364312 GCGTTTG-----TAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATC 364366 || |||| | ||| || |||| |||| | || | |||| | |||||| | Sbjct 86508 GCCTTTGCCAGCTCGAAG--GGGACTTATGACTTCGAGGAGCTTTTCCAGGTAACCAAGG 86565 Query 364367 ATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-C 364425 || || |||| || ||||||| |||||| ||| || ||||| | | || || | Sbjct 86566 TGGCAACCCGCAACCTGAACAAGGTCATCGACCGGAACTACTATCCGGTGTCGGAGGCTC 86625 Query 364426 GAGCGTTCTAATATGCGTCATC-GCCCGATTGGTCTT-GGTGTACAGGGCCTCGCTGA 364481 | | ||||| | ||||||| ||||| ||| ||| || || ||||| || || || Sbjct 86626 GTAAG-TCTAACCTCCGTCATCGGCCCG--TGGGCTTAGGCGTGCAGGGTCTTGCAGA 86680 >seq278 Length=723494 Score = 132 bits (146), Expect = 1e-25 Identities = 410/631 (65%), Gaps = 25/631 (4%) Strand=Plus/Minus Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 ||||| || || ||||| ||||| ||| | || || | || |||||||| || ||||| Sbjct 224335 AGGTATGTGGATCAGGGCGGAGGCAAGAGGAAGGGCTCCTTCGCTATGTACCTGGAGCCC 224276 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 ||||| || | | || || || ||||| || || ||| || || ||||| | Sbjct 224275 TGGCATGCGGACGTGCTCGATTTCCTGGAGCTTCGCAAGAACCACGGCAAGGAGGAGCAG 224216 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| || ||||| ||||||| || ||| | | || | || |||||||| || || Sbjct 224215 CGTGCCCGCGATCTCTTCTATGGGCTCTGGATCCCGGATCTCTTCATGAAGCGGGTCAAG 224156 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA-----ATGTCCAGG----------- 364028 | || | ||| ||||||| ||||| |||| | | | ||| Sbjct 224155 GACAACCAGGACTGGACACTCTTCTGCCCCAACGAGGCCTACGACGAGGAGAGCGGTAAG 224096 Query 364029 --TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG-A 364085 ||| ||| | ||||| | || | | | || ||| | | | || | || | Sbjct 224095 GGTCTCATGGATTTCTGGGGCCAGGAGTTCGAGGAGCTCTAC-ACACGCCTGGAGAGGGA 224037 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 ||| |||| || ||||| | || ||| |||| ||||| |||| | || || || Sbjct 224036 GGGCAAGGGCCGCAAGACGGTCAAGGCGCAGCAGCTTTGGTTCCGCATCCTCGAGTCTCA 223977 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACC 364204 ||| |||||||| || || || ||| |||||||||| | ||| ||||| |||||||||| Sbjct 223976 GATGGAGACAGGCACGCCGTACATGCTGTACAAAGAC-CATGCGAACCGGAAGTCCAACC 223918 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 ||||| ||||||| || || || ||||| || || ||||| ||||| ||||| Sbjct 223917 AGCAGAACCTTGGCACGATCCATTGCTCTAACCTTTGCACGGAGATCATTGAGTACACTT 223858 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA--- 364321 | || ||| || || || ||||| || || || || | || || |||| | Sbjct 223857 CGAAGGATGAGGTGGCAGTGTGCAACCTCGCCTCCATTTCGTTGCCAGCCTTTGCCAGCT 223798 Query 364322 AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATC 364381 ||||| || | |||| ||||| || || | || ||| | || || | || | Sbjct 223797 CGGATGGCACCTATGACTTCCAGCGACTCTACCAAGTGACCAAGGTGGCGACCCGAAACC 223738 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCC 364412 | |||| || || ||| |||||| || || Sbjct 223737 TGAACAAAGTCATTGACCGGAATTACTACCC 223707 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || ||||| || | | ||||||||| |||| || ||||||||||| || Sbjct 224826 TTCACCCATGCGACGCCGACCCTCTTCAATGCTGGGACTCCGAAGCCACAGATGTCCTCG 224767 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAA 363662 |||||||| || || || |||| || |||||| ||||||| ||||| || || Sbjct 224766 TGCTTTCTGCTGAAGTTGCAGGATGACAGCATCGAAGGTATCTACGACACCCTGAA 224711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303191817976016