Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq662 93.3 3e-14 >seq662 Length=408752 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || ||||| ||||| || ||||||||||||| Sbjct 148109 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148050 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||||| || ||||| || | || | ||||| |||||| ||| Sbjct 148049 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 147990 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||||| || ||| Sbjct 147989 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTATCGATGGTGTCGCTGGCCTCAA 147932 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 147931 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || ||||| ||||| || ||||||||||||| Sbjct 148337 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148278 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||||| || ||||| || | || | ||||| |||||| ||| Sbjct 148277 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148218 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||||| || ||| Sbjct 148217 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTATCGATGGTGTCGCTGGCCTCAA 148160 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 148159 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || ||||| ||||| || ||||||||||||| Sbjct 148565 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148506 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||||| || ||||| || | || | ||||| |||||| ||| Sbjct 148505 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148446 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||||| || ||| Sbjct 148445 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTATCGATGGTGTCGCTGGCCTCAA 148388 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 148387 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || ||||| ||||| || ||||||||||||| Sbjct 148793 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148734 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||||||||| || ||||| || | || | ||||| |||||| ||| Sbjct 148733 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148674 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||||| || ||| Sbjct 148673 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTATCGATGGTGTCGCTGGCCTCAA 148616 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 148615 CATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405040170247120