Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq342 132 4e-26 seq97 107 2e-18 >seq342 Length=642287 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || || |||| | || || || ||| Sbjct 509542 GATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACAATCACCTTGGATGTTGAGGCCAG 509483 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| || |||| || ||||| |||||||| || || |||||||| || Sbjct 509482 CGACACCATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCA 509423 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||| ||||||| ||| ||| | || |||||||| Sbjct 509422 GCAGCGACTGATCTTCGCGGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCGGATTACAA 509363 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || ||||| ||| | || || ||| |||| ||||| || || Sbjct 509362 CATCCAGAAGGAATCGACCCTTCACTTGGTTCTGCGCTTGCGAGGCGG 509315 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| ||||| | || || || ||| Sbjct 493830 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACTTTGGACGTTGAGGCCAGT 493771 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||| || || |||||||| || Sbjct 493770 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 493711 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| || ||| | || ||||||||| Sbjct 493710 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGGCGTACCCTGTCGGATTACAAC 493651 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | || || || |||| ||||||| ||| Sbjct 493650 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGCGCGGCGGT 493603 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 475822 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 475763 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || |||||||| || || |||||||| || Sbjct 475762 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 475703 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| ||| ||| | || ||||||||| Sbjct 475702 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 475643 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | || || || |||| ||||| || || Sbjct 475642 ATCCAGAAGGAATCCACCCTTCACTTGGTGCTGCGCTTGCGAGGTGG 475596 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 493602 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGATGTTGAGGCCAGT 493543 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||| || || || ||||| || Sbjct 493542 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 493483 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| || ||| | || ||||||||| Sbjct 493482 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGGCGTACCCTTTCGGATTACAAC 493423 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | || || || |||| ||||| || || Sbjct 493422 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCTTGCGAGGCGG 493376 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 476050 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 475991 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || |||||||| || || |||||||| || Sbjct 475990 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 475931 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| ||| ||| | || ||||||||| Sbjct 475930 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 475871 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | || || || |||| |||| || ||| Sbjct 475870 ATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGT 475823 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 476278 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 476219 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || |||||||| || || |||||||| || Sbjct 476218 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 476159 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| ||| ||| | || ||||||||| Sbjct 476158 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 476099 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | || || || |||| |||| || ||| Sbjct 476098 ATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGT 476051 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 476506 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 476447 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || |||||||| || || |||||||| || Sbjct 476446 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 476387 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| ||||||| ||| ||| | || ||||||||| Sbjct 476386 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 476327 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | || || || |||| |||| || ||| Sbjct 476326 ATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGT 476279 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || ||| |||| | || || || ||| Sbjct 548070 GATGCAGATCTTTGTCAAGACCTTGACGGGGAAGACGATCACCTTGGATGTTGAGGCCAG 548011 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| || |||| || || || |||||||| || || || ||||| || Sbjct 548010 TGACACCATAGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCA 547951 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||||| ||||| || ||| | || |||||||| Sbjct 547950 GCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGTCGTACCCTTTCGGATTACAA 547891 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || ||||| ||| | || || || |||| Sbjct 547890 CATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCG 547855 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| || ||||| || ||||| || || || ||||| || || || || || || | Sbjct 493982 TCAAAGCTAAGATTCAGGATAAGGAAGGCATCCCGCCCGACCAGCAGCGCCTGATTTTCG 493923 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | ||||| ||| | ||||| || ||| | || ||||||||||| || || ||||||| Sbjct 493922 CTGGCAAGCAGCTGGAGGACGGGCGTACCCTTTCGGATTACAACATCCAGAAGGAATCCA 493863 Query 22415 CCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || | || || || |||| ||||||| ||| Sbjct 493862 CCCTGCACTTGGTGCTGCGCCTGCGCGGCGGT 493831 >seq97 Length=1148689 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| ||| |||| | || || || | | Sbjct 999203 ATGCAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGCAAGT 999144 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||| || || || ||||| || Sbjct 999143 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 999084 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| || || ||| ||| | || ||||||||| Sbjct 999083 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTACAAC 999024 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || || |||| ||||| || || Sbjct 999023 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCTTGCGAGGCGG 998977 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| ||| |||| | || || || | | Sbjct 996783 ATGCAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGCAAGT 996724 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||| || || || ||||| || Sbjct 996723 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 996664 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| || || ||| ||| | || ||||||||| Sbjct 996663 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTGTCGGATTACAAC 996604 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || || |||| |||| || || Sbjct 996603 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGAGGCGG 996557 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || || || ||| | ||| | || || || | | Sbjct 999432 GATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATTACTTTGGATGTTGAGGCAAG 999373 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| || |||| || || || |||||||| || || || ||||| || Sbjct 999372 TGACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCA 999313 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||||| || || ||| ||| | || |||||||| Sbjct 999312 GCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTACAA 999253 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || ||||| ||| | || || || |||| |||| || || Sbjct 999252 CATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGAGGCGG 999205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||||||||| || || || ||||| || || || || || || || ||||| Sbjct 996927 AAAATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAG 996868 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || || ||| ||| | || ||||||||||| || || ||||| ||| | || Sbjct 996867 CAGTTGGAAGACGGCCGTACCCTGTCGGATTACAACATCCAGAAGGAATCGACCCTTCAC 996808 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || |||| |||| || || Sbjct 996807 TTGGTGCTGCGCCTGCGAGGCGG 996785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419678441665720