Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq22 138 2e-27 seq691 84.2 4e-11 >seq22 Length=1799166 Score = 138 bits (152), Expect = 2e-27 Identities = 530/821 (65%), Gaps = 21/821 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||| ||||||||||||| | Sbjct 588307 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATCATCTCCATCCAGTCGAAGGGGTTGGAC 588366 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| | |||| || || ||||| || | ||| |||||||| ||||| | Sbjct 588367 GAGTTGAAGATCTTGCTGTGTCCCAGTGCCGTCAACAGGCGATCTGCCACGAACTCGATG 588426 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||| || ||||||||| |||| | || | | ||| | |||||| Sbjct 588427 TACTGGGTCATCAAGTCCTTGTTCATGCCGATCAAATCGCAGGACAGGGCCCCGCAGATG 588486 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGA------ 251796 || ||| || | | || || || | | | || | || | | | Sbjct 588487 AACTCC----CGCT--CCACCTCCACCGCGCCGCGGATCATCTCGTGAACGACATCTTCT 588540 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 | ||||||| ||||||| | ||| || || |||| | ||| || |||||| Sbjct 588541 GGAAGCTTGTGCTCCAGCATGCCGTAGAGCAGGCATGCAAAGTCCGCGTGTAGGCCCTCG 588600 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||||| ||| | ||||||||| | |||||| ||||||| || || ||| | ||| Sbjct 588601 TCGCGGGAGATCAGCTCGTTGGAGAATGTCAGGCCCGGCATCAGGCCGCGCTTCTTCAGC 588660 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||||| ||||| ||||| || ||| || | ||||| || | | || || Sbjct 588661 CAGAAGAGGGCGCAGAAGGAGCCGCTGAAGAGGATGCCCTCCACGGCAGCAAAAGCCACC 588720 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 | |||||| | || | || | || ||| | ||||| ||||||| Sbjct 588721 AAGCGCTCGGTGAAGCTGCTCTCACGGTTCATCCACTGCACAGCCCACAGAGCCTTCTGC 588780 Query 252037 CCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCG 252096 ||| || || || || | ||| ||||| || || | | ||| ||| ||||| | Sbjct 588781 TGAACGGCCGGCATGGTGTGGATGGCATCGAAAAGGCTGCTTTTCTCTGCAGGGTCCTTG 588840 Query 252097 ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGG 252156 ||| | |||| |||||| |||||| |||| ||||||||| || || |||||| Sbjct 588841 ATGTACTGCTCAATCAGGAGCGAGTACGTCTCGGAATGGATGTTCTCCATGGCGATCTGG 588900 Query 252157 TAAGCATAGAATAGACGCGCGGAAGG-GTCGGTGACTTCCGTGGAAAAGTTGTTTGCAAT 252215 | | |||||| | || ||| || | || |||||||| || | || | Sbjct 588901 AAGCCGTAGAATGCCCTGGCCTCAGGAATCTG-CACCTCCGTGGAGAACTGCGCGGCGAG 588959 Query 252216 GTTCTCCATCACCATGCCATC-GCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGATGAAG 252273 |||||||| ||| || || || | || | |||||||| |||||| | | ||| | |||| Sbjct 588960 GTTCTCCAGCACGATTCCGTCAGATG-CAGCAAAGAAGGCCAAG-ACGTGCTTCACGAAG 589017 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACT 252333 || |||| | ||||| | | ||||| |||||| ||||||| ||| | Sbjct 589018 TGCTGCTCGCCTTCGTTCA--TCGTCAC-CCAGTCCTTGTTGTCCTGCGCCAGGTCGATC 589074 Query 252334 TCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || ||| | |||||||||| | | | |||||||||||| Sbjct 589075 TCCTCCGCTGTCCAGAATGAAGCCTCATGCTTCTTGTACAT 589115 >seq691 Length=396543 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||| ||||||| || | ||||| || ||||||||||||||||| Sbjct 286353 AGCCCGCCTAGCTCAGTCGGCAGAGCGCAAGGCCCTTAACCTTGTGGTCGTGGGTTCGAG 286412 Query 142563 CCCCAC 142568 |||||| Sbjct 286413 CCCCAC 286418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027709217187608