Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq97 91.5 1e-13 seq342 84.2 2e-11 >seq97 Length=1148689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| |||||||||| ||||| || |||||||| ||||||||||| | | Sbjct 996557 CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAC 996616 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct 996617 AGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 996676 Query 34021 ACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 996677 ATGCCTTCCTTGTCC 996691 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| |||||||||| ||||| || |||||||| ||||||||||| | | Sbjct 996785 CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAC 996844 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct 996845 AGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 996904 Query 34021 ACGCTCTCTTTGTC 34034 | || || ||||| Sbjct 996905 ATGCCTTCCTTGTC 996918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| |||||||||| ||||| || |||||||| ||||||||||| | Sbjct 999205 CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG-A 999263 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct 999264 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999323 Query 34020 CACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 999324 GATGCCTTCCTTGTCC 999339 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || |||||||||| ||||| || |||||||| ||||||||||| | Sbjct 998977 CCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG-A 999035 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| ||||| |||||||| || || |||||||||||||| || ||| Sbjct 999036 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999095 Query 34020 CACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 999096 GATGCCTTCCTTGTCC 999111 >seq342 Length=642287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||||| || || ||| |||||||| ||||||||||| | Sbjct 493831 ACCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG- 493889 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || ||| |||| |||| |||||||| || || |||||||||||||| || Sbjct 493890 AAAGGGTACGCCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTC 493944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397015517849776