Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq342 113 1e-19 seq97 107 5e-18 >seq342 Length=642287 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| || || || || || ||||| Sbjct 547878 TTCCTTCTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCAACTGCTTGCCAGCGAA 547937 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 547938 GATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 547997 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| | || || | || || || | |||||||||||||| |||| |||||||| Sbjct 547998 GTCTATGGTGTCACTGGCCTCAACATCCAAGGTGATCGTCTTCCCCGTCAAGGTCTTGAC 548057 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 548058 AAAGATCTGCAT 548069 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || ||||| || || || | || || || ||||| |||| || Sbjct 475620 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCTAGCTGC 475679 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||||||| ||||| || |||||| ||||| || |||||||| || Sbjct 475680 TTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTA 475739 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | || || | || || || | ||||||||||| || ||| Sbjct 475740 GCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTGCCCGTC 475799 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || |||||||| Sbjct 475800 AAGGTCTTGACAAAGATCTGCAT 475822 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 476315 TTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAA 476374 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || |||||| ||||| || |||||||| || || || || || Sbjct 476375 GATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 476434 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 476435 ATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGAC 476494 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 476495 AAAGATCTGCATT 476507 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 475859 TTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAA 475918 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || |||||| ||||| || |||||||| || || || || || Sbjct 475919 GATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 475978 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 475979 ATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGAC 476038 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 476039 AAAGATCTGCAT 476050 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 476087 TTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAA 476146 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || |||||| ||||| || |||||||| || || || || || Sbjct 476147 GATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 476206 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 476207 ATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGAC 476266 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 476267 AAAGATCTGCAT 476278 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 493639 TTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAA 493698 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || |||||| ||||| || |||||||| || || || || || Sbjct 493699 GATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 493758 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 493759 GTCGATCGTGTCACTGGCCTCAACGTCCAAAGTGATCGTCTTGCCCGTCAAGGTCTTGAC 493818 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 493819 AAAGATCTGCAT 493830 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 509350 TTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAA 509409 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || |||||| ||||| || ||||| || || || || || || Sbjct 509410 GATCAGTCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATT 509469 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| | ||||| | || || || | ||||| ||||| || |||| |||||||| Sbjct 509470 GTCTATGGTGTCGCTGGCCTCAACATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGAC 509529 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 509530 AAAGATCTGCAT 509541 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || ||||| |||| || || || ||||| Sbjct 493411 TTCCTTCTGGATGTTGTAATCCGAAAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAA 493470 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 493471 GATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 493530 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 493531 GTCGATCGTGTCACTGGCCTCAACATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGAC 493590 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 493591 AAAGATCTGCAT 493602 >seq97 Length=1148689 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || |||||||| || || || || ||||| Sbjct 996592 TTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAA 996651 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 996652 GATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 996711 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 996712 GTCGATCGTGTCACTTGCCTCAACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGAC 996771 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 996772 AAAGATCTGCAT 996783 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || |||||||| || || || || ||||| Sbjct 999012 TTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAA 999071 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 999072 GATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 999131 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | ||||||||||| || |||| |||||||| Sbjct 999132 GTCGATCGTGTCACTTGCCTCAACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGAC 999191 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 999192 AAAGATCTGCAT 999203 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | || || || |||||||| || || || || ||||| Sbjct 999240 TTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAA 999299 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 999300 GATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 999359 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || | || |||||||| || |||| |||||||| Sbjct 999360 GTCGATCGTGTCACTTGCCTCAACATCCAAAGTAATCGTCTTGCCCGTCAAGGTCTTGAC 999419 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 999420 AAAGATCTGCAT 999431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179507972448464