Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq323 230 2e-55 seq837 203 3e-47 seq278 147 2e-30 seq155 111 2e-19 >seq323 Length=666680 Score = 230 bits (254), Expect = 2e-55 Identities = 515/771 (67%), Gaps = 23/771 (3%) Strand=Plus/Minus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| | || ||||| || ||||| || ||||| ||| |||||||||||| || || | Sbjct 306841 CCATG-CGACGCCGACTCTCTTCAATGCTGGGACTCCGAAGCCACAGATGTCCTCCTGCT 306783 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 ||||| ||| | ||| ||| ||| || || | |||| ||| ||| | || | Sbjct 306782 TCCTGCTGAAGTTGCAGGATGACAGCATTGAGGGTATCTATGACACCCTGAAGCAGTGCG 306723 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGAT--CAGTGTCCACGACGTACGTGCCAG 94064 | ||||||| || | || || ||||| || | || | || | |||| |||||||| Sbjct 306722 CTTCCATCTCCAAGTCTGCCGGTGGAATTGGCGTGGCAATCTCGA--ACGTGCGTGCCAG 306665 Query 94065 GGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGT 94124 || |||||||| ||||| || || ||| | ||| ||| |||| || |||||||| Sbjct 306664 CGGCTCCTACATTCGCGGCACGAACGGCCACAGCAATGGCATCGTACCCATGCTCCGTAA 306605 Query 94125 CTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGC 94184 |||||| | ||||| | || ||||| ||||| || || | ||||||||| || ||||| Sbjct 306604 TTTCAACGAGACGGCGAGGTATGTGGATCAGGGCGGCGGCAAGAGGAAGGGCTCATTCGC 306545 Query 94185 GGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCA 94244 | || || ||||||||||| ||| | || | ||| | || || || |||||||| Sbjct 306544 TATGTACCTGGAGCCCTGGCATGCGAATGTTTTTGACTTCCTGGAGCTTCGCAAGAACCA 306485 Query 94245 CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 |||||| || | || | ||| | || |||||||||| |||||| | || || || || Sbjct 306484 CGGCAAGGAGGAGCAGCGTGCCCGCGATCTCTTCTACGGGCTCTGGATCCCGGATCTCTT 306425 Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA-----ATGT 94359 ||||| || ||| || | ||| | ||||| || || || || || || | | Sbjct 306424 CATGAAGCGGGTCAAGGACAACCAGGACTGGACACTCTTCTGCCCGAACGAGGCCTACGA 306365 Query 94360 CCCGGA---CTGTCCGACGTTTGTGGAT----------CGCGTTTTGAAGACTTGTATGC 94406 | ||| | || | | | ||||| | || || || |||| | Sbjct 306364 CGAGGAGAGCGGTAAGGGGCTCATGGATTTCTGGGGCCAGGAGTTCGAGGAACTGTACAC 306305 Query 94407 TCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCA 94466 || || | ||||||||| | | ||| | | || | |||| ||| | Sbjct 306304 ACGCCTGGAGAGGGAGGGCAAGGGCCGCAAGACAGTCAAGGCACAGCAGCTTTGGTTCCG 306245 Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 ||| | || ||| ||||||| || ||||| ||||| ||| ||| ||| || || Sbjct 306244 CATCCTCGAGTCTCAGATGGAGACAGGCACGCCTTACATGCTGTACAAAGACCATGCGAA 306185 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | ||||||||||||||| ||||||| |||| | |||| || || || || ||||| Sbjct 306184 CCGGAAGTCCAACCAGCAGAACCTCGGCACGATCCATTGCTCCAACCTTTGTACAGAGAT 306125 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 | ||||| ||| | ||| ||| | || ||||| ||||| | |||||| Sbjct 306124 CATTGAGTACACTGCGAAGGATGAGGTAGCAGTGTGCAACCTCGCCTCCAT 306074 >seq837 Length=329666 Score = 203 bits (224), Expect = 3e-47 Identities = 570/867 (66%), Gaps = 50/867 (6%) Strand=Plus/Plus Query 93997 AAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGAC-GT 94055 ||| | || || ||||||| || | || || |||||||| | | | | ||| || Sbjct 85839 AAGCAGTGCGCCTCCATCTCCAAGTCTGCCGGCGGAATCGGCGTG-GCGATCTCGAATGT 85897 Query 94056 ACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTAT 94115 ||||| | || || ||||| || || ||||||||| | ||| |||||||| || || Sbjct 85898 GCGTGCTGGCGGGTCGTACATTCGTGGCACCAATGGCCACAGCAATGGCCTCGTGCCCAT 85957 Query 94116 GCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGG 94175 ||||||| ||||||| | ||||||| ||||| || |||||||| || | ||||||||| Sbjct 85958 GCTCCGGAACTTCAACGAGACGGCGCGGTACGTCGATCAGGGTGGAGGAAAGAGGAAGGG 86017 Query 94176 TTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCG 94235 ||||||||| | || || ||||| |||||||| || || | || | || ||| | Sbjct 86018 CTCTTTCGCGATGTACCTGGAGCCTTGGCACGCAGATGTCTTCGACTTGTTGGAGCTGAG 86077 Query 94236 AAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCC 94295 ||||| |||||||| || | || | ||| | || |||||||| | |||||| | || Sbjct 86078 GAAGAATCACGGCAAGGAGGAGCAGCGCGCCCGGGATCTCTTCTATGGGCTCTGGATTCC 86137 Query 94296 AGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA 94355 || || || |||| || ||| || | |||| | |||| ||| ||||| || || || Sbjct 86138 GGATCTCTTCATGACTCGGGTCAAGGACAACTTGGATTGGACTCTCTTTTGCCCAAACGA 86197 Query 94356 ATGTCC-----CG-GACT----GTCCGACGTTTGTGGATC------GCGT----TTTGAA 94395 | || || ||| || | | | ||||| ||| || || Sbjct 86198 --GGCCTACGACGAGACAAGTGGTAAGGGGCTAATGGATGCATGGGGCGAGGAGTTCGAG 86255 Query 94396 GACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAG 94455 | |||| | || || | ||||||||| ||||||| | | || | || Sbjct 86256 GCGCTGTACACGCGCCTGGAGAGGGAGGGCAAGGGACGGAAGGTGGTCAAGGCACAGCAG 86315 Query 94456 CTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAG 94515 || ||| | || | || ||| |||||||||| ||||| ||||| ||| |||| Sbjct 86316 CTTTGGTTCCGCATTCTCGAGTCGCAGATGGAGACGGGCACGCCTTACATGCTGTACAAG 86375 Query 94516 GACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTG 94575 ||| | ||| |||||||||||||||| | ||||| ||| | |||| || || Sbjct 86376 GACCACGCGAACCGCAAGTCCAACCAGCAGAATCTCGGCACAATCCACTGCTCCAACCTT 86435 Query 94576 TGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCC 94635 || || || ||| | ||||| ||| | ||| ||| | || ||||| ||||||| |||| Sbjct 86436 TGTACAGAAATTATTGAGTACACTGCGAAGGATGAGGTGGCAGTGTGCAACCTGGCCTCC 86495 Query 94636 ATCAACCTGTCCA-CTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGA 94694 ||| ||| ||| | || ||| || || | | ||| | || | || Sbjct 86496 ATC-TCCTTACCAGCCTT--TGCCAG----CTCGAAGGGGACT------TATGACTTCGA 86542 Query 94695 GGAGCTTGTGAACTTCGCGGGAAGGATGGT------CTTGAACCTGAACAGGGTAATCGA 94748 ||||||| ||| || || | ||| | |||||||||| ||| ||||| Sbjct 86543 GGAGCTT------TTCCAGGTAACCAAGGTGGCAACCCGCAACCTGAACAAGGTCATCGA 86596 Query 94749 CAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGG 94808 | ||||| ||| || || ||||||| || || ||||| ||||||||| | || Sbjct 86597 CCGGAACTACTATCCGGTGTCGGAGGCTCGTAAGTCTAACCTCCGTCATCGGCCCGTGGG 86656 Query 94809 CATCGGCGTCCAGGGTTTCGCGGACGC 94835 | | ||||| |||||| | || || || Sbjct 86657 CTTAGGCGTGCAGGGTCTTGCAGATGC 86683 >seq278 Length=723494 Score = 147 bits (162), Expect = 2e-30 Identities = 340/512 (66%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 || ||||| ||||| || || | ||||||||| || ||||| | || || ||||||||| Sbjct 224332 TATGTGGATCAGGGCGGAGGCAAGAGGAAGGGCTCCTTCGCTATGTACCTGGAGCCCTGG 224273 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 || |||||||||| | |||| | || || || |||||||||||||| || | || | Sbjct 224272 CATGCGGACGTGCTCGATTTCCTGGAGCTTCGCAAGAACCACGGCAAGGAGGAGCAGCGT 224213 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAA 94323 ||| | || |||||||| | |||||| | || || || || ||||| || ||| || | Sbjct 224212 GCCCGCGATCTCTTCTATGGGCTCTGGATCCCGGATCTCTTCATGAAGCGGGTCAAGGAC 224153 Query 94324 AACTCCGCCTGGAGTCTTTTTTGTCCCAATGA-----ATGTCCCGG---------ACTGT 94369 ||| | ||||| || || || ||||| || | | | || | || Sbjct 224152 AACCAGGACTGGACACTCTTCTGCCCCAACGAGGCCTACGACGAGGAGAGCGGTAAGGGT 224093 Query 94370 CCGACG--TTTGTGGATC--GCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGC 94425 | | | ||| ||| | | || || || | || | || || | ||||| Sbjct 224092 CTCATGGATTTCTGGGGCCAGGAGTTCGAGGAGCTCTACACACGCCTGGAGAGGGAGGGC 224033 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 |||| | | ||| | | || | |||| ||| | ||| | || ||| || Sbjct 224032 AAGGGCCGCAAGACGGTCAAGGCGCAGCAGCTTTGGTTCCGCATCCTCGAGTCTCAGATG 223973 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || ||||| ||||| ||| ||| ||| || ||| ||||||||||||||| Sbjct 223972 GAGACAGGCACGCCGTACATGCTGTACAAAGACCATGCGAACCGGAAGTCCAACCAGCAG 223913 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || |||| | |||| || || ||||| ||||| | ||||| ||||| | Sbjct 223912 AACCTTGGCACGATCCATTGCTCTAACCTTTGCACGGAGATCATTGAGTACACTTCGAAG 223853 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 || ||| | || ||||| ||||| | |||||| Sbjct 223852 GATGAGGTGGCAGTGTGCAACCTCGCCTCCAT 223821 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 93997 AAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGAT--CAGTGTCCACGACG 94054 ||| | || || ||||||| |||| || || ||||| || | || | || | ||| Sbjct 224613 AAGCAGTGCGCTTCCATCTCCAAATCTGCCGGTGGAATTGGCGTGGCAATCTCGA--ACG 224556 Query 94055 TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTA 94114 | |||||||| || |||||||| ||||| ||||| ||| | |||||||||||| || | Sbjct 224555 TGCGTGCCAGCGGCTCCTACATTCGCGGCACCAACGGCCACAGCAACGGCCTCGTACCCA 224496 Query 94115 TGCTCCGGGTCTTCAACAACGCGGCG 94140 ||||||| |||||| | ||||| Sbjct 224495 TGCTCCGCAATTTCAACGAGACGGCG 224470 >seq155 Length=966944 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||| || |||||||||||||| || | ||||||||| |||||||| | || || ||| Sbjct 376174 GCGCGATATGTGGACCAGGGTGGAGGCAAGAGGAAGGGATCTTTCGCTATGTACCTGGAG 376233 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 ||||||||||| || || | || ||| | || ||||||||||||||||| || || || Sbjct 376234 CCCTGGCACGCAGATGTCCTGGACTTCTTGGAGCTGCGAAAGAACCACGGGAAGGACCT 376292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494663289020480