Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq662 87.8 2e-12 seq155 86.0 6e-12 >seq662 Length=408752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| ||||||||| | || | || ||||| || Sbjct 148997 TGAAGGGTGGATTCCTTCTGGATGTTATAATCGGAAAGTGTCCTTCCGTCCTCCAACTGC 148938 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || ||||||||||| || |||||||| || || || || || Sbjct 148937 TTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTA 148878 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||||| | ||| || || | |||| ||| ||||| || Sbjct 148877 GCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGCCCGTC 148818 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 148817 AGGGTCTTCACGAAGATCTGCAT 148795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | || || || |||||||| ||||| || || ||| Sbjct 148112 ATGCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCG 148053 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 148052 GAAAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGA 147993 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | ||||||| | ||| Sbjct 147992 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCA 147933 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||| ||||| || || || || || || || ||||| Sbjct 147932 ACATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | || || || |||||||| ||||| || || ||| Sbjct 148340 ATGCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCG 148281 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 148280 GAAAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGA 148221 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | ||||||| | ||| Sbjct 148220 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCA 148161 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||| ||||| || || || || || || || ||||| Sbjct 148160 ACATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | || || || |||||||| ||||| || || ||| Sbjct 148568 ATGCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCG 148509 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 148508 GAAAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGA 148449 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | ||||||| | ||| Sbjct 148448 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCA 148389 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||| ||||| || || || || || || || ||||| Sbjct 148388 ACATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | || || || |||||||| ||||| || || ||| Sbjct 148796 ATGCCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCG 148737 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || ||||| || || || ||| | ||||| || ||||||||||| Sbjct 148736 GAAAGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGA 148677 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | ||||||| | ||| Sbjct 148676 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCA 148617 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||| ||||| || || || || || || || ||||| Sbjct 148616 ACATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148567 >seq155 Length=966944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 124191 AACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAAC 124250 ||||||||| |||| ||| ||||| ||||| | ||| || || || || || |||||| Sbjct 379109 AACTCGCTGCTGGTCGCGCCAATGCCTACGGCGAGCACAGCACAGATCTTGGGGAACAAC 379168 Query 124251 GAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTG 124295 || ||||||||||||| ||| | || | |||||||| |||||| Sbjct 379169 GAGTCCTTCGAGCCGTACACGCAGAACCTCTACGTGCGCCGAGTG 379213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451948462412480