Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq837 170 3e-37 seq1090 116 6e-21 seq22 116 6e-21 seq1075 111 3e-19 seq152 87.8 3e-12 >seq837 Length=329666 Score = 170 bits (188), Expect = 3e-37 Identities = 461/686 (67%), Gaps = 36/686 (5%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGC-TTCTCAGATAGTACATGCCG 203899 ||||| ||||||| || || | | |||| |||| | ||| |||||||| | ||| Sbjct 87409 TCCACGGTGAACTTGATAGCAT---CAGCAGCTGCCTTCGTTCGAAGATAGTAAAGGCCT 87353 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| | ||| |||||| |||| | ||||||||| ||||| ||| | | Sbjct 87352 GTCTTCAAGCCTAGCTGCCAGCCGTGGAAGTGCATGGATGACAGCTTGGCAGTGGTCACA 87293 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 || | ||||||||||||||| ||||| || |||||| || |||| ||||| |||| Sbjct 87292 TCCGTCATGTGAATGTTCAGCGACTGCGACTGATCGATGTAAA-CGCCTCGATCACCGGC 87234 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| | | | ||||||| || ||||| || |||||| ||| ||| || | Sbjct 87233 CATGTCTAGGACAACCTTCTGCCTGATTTCCCAAACAGTCTTGTACAGCTCTTTGAGATC 87174 Query 204079 TTGAGGCACATCTTCCCACGTCCTGATCGA-GCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 || |||| || || || || | |||||||| || ||||| || | Sbjct 87173 CTGTGGCAGGTC----CATGTTTTGCACACTGCCGTTGTGCGCGATCAGCTGCACACGGA 87118 Query 204138 TCTCCTCCCCCCACATGCCCAACCTG-ATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 ||||| ||||| |||| ||| || || ||| | ||||||| | || | | Sbjct 87117 GTTCCTCGTTCCACAA-CCCACGCTGGATGAGATCCTTGAGCAGGTGGCGATTCACTTGC 87059 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||| || || || ||||||| || | | ||||| | ||| | || ||||| | | Sbjct 87058 ACAAACTCCCCCGAAAGCACCCGGCGAACGTAGAGGTTTTGCGTGTAAGGCTCGAAGGAC 86999 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| |||||||| || |||||||||||||||||||| |||| |||| ||| Sbjct 86998 TCGTTGTTGCCCAAAATCTGTGCTGTGCTGGCCGTGGGCATGGGTGCCACCAGCAAGGAA 86939 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGCG---CTTCAGAGAGGTCCAGTCGTGCATCG-- 204371 || || | ||| | | || | |||| ||||| | |||||||| || || Sbjct 86938 TTCCGAAGCCCGAA---TCGGCCGATGCGTGCTTTCAGCGCCGTCCAGTC--CCAGCGGC 86884 Query 204372 CACTG---GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 ||||| || | | ||||||| ||||||||| | | ||||| ||| | ||||| | Sbjct 86883 CACTGCGTGGCTGCCGACCCCACAGGTCGAACTGCAGCAGGCCTTTGCTGGCAGGGCTAC 86824 Query 204429 CCTTGTACGTCGGATAA-GGCTG--ATCCTCTTCTGCCAGCTTGCACGAGGCGGC-CATG 204484 | | ||| ||| |||| ||| | | || || ||||| | |||||||| | || | Sbjct 86823 CTTCGTAGGTCTCATAAGGGCCGCAAGCC---TCAGCCAGTTCACACGAGGCCTCGCAAG 86767 Query 204485 GCGTGATAGTACATGGTCTCAAAGAT 204510 | || |||| |||||||| ||||| Sbjct 86766 CTGCGA-AGTAGATGGTCTCGAAGAT 86742 >seq1090 Length=248447 Score = 116 bits (128), Expect = 6e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| |||||||| |||||| |||||||| || ||||||| ||||||||| | | | || Sbjct 62475 GCATGCAAAGTCCGCGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAG 62416 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAA 160040 ||||||||| | || ||| || ||||| || | ||| ||| ||| | |||||||| | Sbjct 62415 GCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAAGAGGGC-GCAGAAGGAGCCGCTAAAGA 62357 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||| ||||||||||| ||||| ||||| Sbjct 62356 GGATGCCCTCCACGGCAGCAAAAGCCAC 62329 >seq22 Length=1799166 Score = 116 bits (128), Expect = 6e-21 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||| ||| || |||||||| || ||||||| ||||||||| | | Sbjct 596070 AGCAGGCATGCAAAGTCCGCGTGTAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 596129 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 | ||||||||||| | || ||| || ||||| || | || |||| ||| | ||||| Sbjct 596130 GTCAGGCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAAGA-GGGCGCAGAAGGAGCCGCT 596188 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||| | ||| ||||||||||| ||||| ||||| Sbjct 596189 AAAGAGGATGCCCTCCACGGCAGCAAAAGCCAC 596221 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||| ||| || |||||||| || ||||| | ||||||||| | Sbjct 588568 AGCAGGCATGCAAAGTCCGCGTGTAGGCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAT 588627 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 | ||||||||||| | || ||| || ||||| || | || |||| ||| | ||||| Sbjct 588628 GTCAGGCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAAGA-GGGCGCAGAAGGAGCCGCT 588686 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || | ||| ||||||||||| ||||| ||||| Sbjct 588687 GAAGAGGATGCCCTCCACGGCAGCAAAAGCCAC 588719 >seq1075 Length=250942 Score = 111 bits (122), Expect = 3e-19 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || |||||||||||||| ||| || ||||| || || ||||||| ||||||||| | | Sbjct 199221 AGCAGGCACGCAAAGTCCGCGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAG 199162 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 | ||||||||||| | || ||| || ||||| || | || |||| ||||| ||||| Sbjct 199161 GTCAGGCCCGGCATCAGGCCGCGCTTCTTCAGCCAGAAGA-GGGCGCAGAAGCAGCCGCT 199103 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || | ||| |||||||| || ||||| ||||| Sbjct 199102 GAAGAGGATGCCCTCCACAGCGGCAAAAGCCAC 199070 >seq152 Length=977420 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 |||| |||||||| ||| || ||||||| || ||||||| ||| ||||| | | | | Sbjct 389678 GGCATGCAAAGTCCAAGTTTAGGCCCTCGTGGCGGGAGATGAGCTCCTTGGAGAAGGTCA 389619 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAA 160039 |||||||||| | || ||| || ||||| || | |||| || ||| | ||||| ||| Sbjct 389618 GGCCCGGCATCAGGCCGCGCTTCTTTAGCCAGAAGAGGGCC-CAGAAGGAGCCGCTGAAA 389560 Query 160040 AAGATCCCCTCCACGGC 160056 ||| ||||||||||| Sbjct 389559 GGGATGCCCTCCACGGC 389543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795058906705280