Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq435 125 3e-23 seq1297 111 6e-19 seq897 95.1 5e-14 >seq435 Length=558145 Score = 125 bits (138), Expect = 3e-23 Identities = 274/402 (68%), Gaps = 49/402 (12%) Strand=Plus/Minus Query 507065 AAATATATTTTTAAAATTTGTGGTTCTTATAGAAGAAATAAACCAACATCTGGTGATATT 507124 ||||| | || ||||||| ||||| || |||||||||||| | || |||||||| Sbjct 42264 AAATACGTATTAGAAATTTGCGGTTCCTACAGAAGAAATAAAGAATATTCAGGTGATATA 42205 Query 507125 GATATTTTAATTACACaaaaaaaTACTT--CTAAAACATCAAAATATTTAGATGAACACT 507182 || |||||| | || ||||||||| || ||| || || |||||| | || | Sbjct 42204 GACATTTTATTAACT-AAAAAAATAATTATCTATGTAAT--AATTATTTAAAAGA----T 42152 Query 507183 TACCTAAAATTATACAAATGTTTAAACAACCATGGAAAGGAAATAATTTTAAACCATTTT 507242 | | |||| || | ||||| || || ||| ||||| Sbjct 42151 TTC-----ATTACACGA----TTAAAAAA---TGAAAA---------TTTAA-------- 42121 Query 507243 TAATAGATAATCTTACTGATA----TTACACCTACTAAATATATGGGATTTGCTCAATTT 507298 |||||||| || ||||||||| ||| | || ||||||||||| ||| ||| | Sbjct 42120 TAATAGATGATATTACTGATAAAAATTATAAA-ACAAAATATATGGGTTTTTTGAAATAT 42062 Query 507299 AAAAATAATTTACCTTTTAGAATTGATATTAGATTTGTATCATATGATAGTTTTTA-TAC 507357 |||||| | ||| ||||| ||| | |||||||| || | | |||||||| || Sbjct 42061 AAAAATGAGTTAGTAAGAAGAATAGATGTAAGATTTGTTTCTTGGAAAAGTTTTTATTAT 42002 Query 507358 AGCATTATTGTATTTTACGGGTAGTGAT---GAATTTAATAAAGTTATGAGAAATATAGC 507414 || || || |||||||| |||||| || |||||||||| | |||||||| ||| || Sbjct 42001 AG-TTTGTTATATTTTACAGGTAGT-ATACGGAATTTAATAGAAATATGAGAACTATTGC 41944 Query 507415 AAAAGATAAAGGTTATAAATTAAGTGAATATGGATTATTTAA 507456 |||||| ||| ||||||||| |||||||||| ||| ||| Sbjct 41943 TAAAGATTTAGGATATAAATTATCTGAATATGGAATATATAA 41902 Score = 120 bits (132), Expect = 1e-21 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 201159 TATGAAAGATTAGAATATTTAGGTGATAGAGTTATTAAATTAATTGTTAGCATGTATTTA 201218 |||||||||||||||| |||||||||||||||| | ||| ||| | | | |||||| Sbjct 43170 TATGAAAGATTAGAATTTTTAGGTGATAGAGTTTTGAAAATAAATATATCAACATATTTA 43229 Query 201219 TTTCATCGTTATCCAAAACAAGATGAAGGTTTCATGACAAAATTACAAACAGTTATAGAA 201278 | | || | ||| | || ||||||| || ||||| |||||||| | | ||| Sbjct 43230 TATTATAGGTATGAAGAATGTAATGAAGGATTTATGACGCGATTACAAATAAAATTCGAA 43289 Query 201279 GATAAAAATAATTTATCAAAAATGTCAAGAGATATGGGATTAAGTAAATATTTTATTATA 201338 |||||||| | || || || | || | || | || || ||||||||||||||| Sbjct 43290 GATAAAAAAACACTAGCACAATTATCTAAAGTATTAGGTTTGGAAAAATATTTTATTATA 43349 Query 201339 TCAAAACAAATTGAAAATATAAGAGGACGAGAAGCAGAAAAATTTAATGAAGAT 201392 |||||||| ||| || || ||| ||||| ||||||||| |||||||| Sbjct 43350 AGTAAACAAATAGAATATGAAAATGGAAGAGAATTAGAAAAATTACATGAAGAT 43403 >seq1297 Length=178692 Score = 111 bits (122), Expect = 6e-19 Identities = 244/358 (68%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| || || | || || ||||| || | |||||||| || ||||| || | ||| Sbjct 38395 CTCCGGAGGAGGTGTCCTCCATGGTCCTCGCAAAAATGAAGGAGACAGCTGAGAACTAT- 38453 Query 451302 TTGGTTCTCCAGTTACTG-ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360 |||| | || | | | |||| || | ||||| || || || |||||||||||||| Sbjct 38454 TTGGGCCAGGAGGTTCAGCATGCGGTCGTGACTGTACCTGCATACTTCAATGATGCACAG 38513 Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 || || || || ||||||||||| ||||| || | | || | || || | ||| Sbjct 38514 CGCCAGGCTACCAAAGATGCAGGTTCAATTGCAGGACTTCAGGTGTTGCGGATCGTGAAT 38573 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaa 451479 |||||||| || ||||| |||| ||||| || | ||| | | || ||||||||| Sbjct 38574 GAACCTACGGCCGCTGCGATAGCTTATGGCCTCGACAAA--GAGGGCGACGAGAAGAAAA 38631 Query 451480 -aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTG 451538 | ||| | | || | |||| | || |||||||| ||| || |||| |||| Sbjct 38632 TATATA-TATGGTCTATGATCTCGGGGGAGGAACCTTTGACGTGTCCCTACTGAACATTG 38690 Query 451539 AAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 |||| || || ||||| | |||||||| ||| || || || || || || || || Sbjct 38691 CGCATGGTGTCTTCGAAGTGATGGCAACCAGTGGCGACACCCACCTGGGTGGAGAGGA 38748 >seq897 Length=312193 Score = 95.1 bits (104), Expect = 5e-14 Identities = 236/356 (66%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| || || | || || ||||| || | |||||||| || ||||| || | ||| Sbjct 50087 CTCCGGAGGAGGTGTCCTCCATGGTCCTCGCAAAAATGAAGGAGACAGCTGAGAACTAT- 50145 Query 451302 TTGGTTCTCCAGTTACTG-ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360 |||| | || | | | |||| || | || || || || || |||||||||||||| Sbjct 50146 TTGGGCCAGGAGGTTCAGCATGCGGTCGTGACAGTACCAGCATACTTCAATGATGCACAG 50205 Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 || || || || ||||| ||||| ||||| || | | || | || || | ||| Sbjct 50206 CGCCAGGCTACCAAAGACGCAGGTTCAATTGCAGGACTTCAGGTGTTGCGGATCGTGAAT 50265 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa 451480 |||||||| || ||||| |||| ||||| || | ||||| || || || Sbjct 50266 GAACCTACGGCCGCTGCGATAGCTTATGGCCTCG------ACAAAGAGGGCGACGAGAAG 50319 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || || | || | |||| | || |||||||| ||| || |||| |||| Sbjct 50320 AACATCCTGGTCTATGATCTCGGGGGAGGAACCTTTGACGTGTCCCTACTGAACATTGCG 50379 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 | || || || ||||| | |||||||| ||| || ||||| || || || || || Sbjct 50380 AACGGTGTCTTCGAAGTGATGGCAACCAGTGGCGACACTCACCTGGGTGGAGAGGA 50435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975473159014304