Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq435 125 3e-23
seq1297 111 6e-19
seq897 95.1 5e-14
>seq435
Length=558145
Score = 125 bits (138), Expect = 3e-23
Identities = 274/402 (68%), Gaps = 49/402 (12%)
Strand=Plus/Minus
Query 507065 AAATATATTTTTAAAATTTGTGGTTCTTATAGAAGAAATAAACCAACATCTGGTGATATT 507124
||||| | || ||||||| ||||| || |||||||||||| | || ||||||||
Sbjct 42264 AAATACGTATTAGAAATTTGCGGTTCCTACAGAAGAAATAAAGAATATTCAGGTGATATA 42205
Query 507125 GATATTTTAATTACACaaaaaaaTACTT--CTAAAACATCAAAATATTTAGATGAACACT 507182
|| |||||| | || ||||||||| || ||| || || |||||| | || |
Sbjct 42204 GACATTTTATTAACT-AAAAAAATAATTATCTATGTAAT--AATTATTTAAAAGA----T 42152
Query 507183 TACCTAAAATTATACAAATGTTTAAACAACCATGGAAAGGAAATAATTTTAAACCATTTT 507242
| | |||| || | ||||| || || ||| |||||
Sbjct 42151 TTC-----ATTACACGA----TTAAAAAA---TGAAAA---------TTTAA-------- 42121
Query 507243 TAATAGATAATCTTACTGATA----TTACACCTACTAAATATATGGGATTTGCTCAATTT 507298
|||||||| || ||||||||| ||| | || ||||||||||| ||| ||| |
Sbjct 42120 TAATAGATGATATTACTGATAAAAATTATAAA-ACAAAATATATGGGTTTTTTGAAATAT 42062
Query 507299 AAAAATAATTTACCTTTTAGAATTGATATTAGATTTGTATCATATGATAGTTTTTA-TAC 507357
|||||| | ||| ||||| ||| | |||||||| || | | |||||||| ||
Sbjct 42061 AAAAATGAGTTAGTAAGAAGAATAGATGTAAGATTTGTTTCTTGGAAAAGTTTTTATTAT 42002
Query 507358 AGCATTATTGTATTTTACGGGTAGTGAT---GAATTTAATAAAGTTATGAGAAATATAGC 507414
|| || || |||||||| |||||| || |||||||||| | |||||||| ||| ||
Sbjct 42001 AG-TTTGTTATATTTTACAGGTAGT-ATACGGAATTTAATAGAAATATGAGAACTATTGC 41944
Query 507415 AAAAGATAAAGGTTATAAATTAAGTGAATATGGATTATTTAA 507456
|||||| ||| ||||||||| |||||||||| ||| |||
Sbjct 41943 TAAAGATTTAGGATATAAATTATCTGAATATGGAATATATAA 41902
Score = 120 bits (132), Expect = 1e-21
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 201159 TATGAAAGATTAGAATATTTAGGTGATAGAGTTATTAAATTAATTGTTAGCATGTATTTA 201218
|||||||||||||||| |||||||||||||||| | ||| ||| | | | ||||||
Sbjct 43170 TATGAAAGATTAGAATTTTTAGGTGATAGAGTTTTGAAAATAAATATATCAACATATTTA 43229
Query 201219 TTTCATCGTTATCCAAAACAAGATGAAGGTTTCATGACAAAATTACAAACAGTTATAGAA 201278
| | || | ||| | || ||||||| || ||||| |||||||| | | |||
Sbjct 43230 TATTATAGGTATGAAGAATGTAATGAAGGATTTATGACGCGATTACAAATAAAATTCGAA 43289
Query 201279 GATAAAAATAATTTATCAAAAATGTCAAGAGATATGGGATTAAGTAAATATTTTATTATA 201338
|||||||| | || || || | || | || | || || |||||||||||||||
Sbjct 43290 GATAAAAAAACACTAGCACAATTATCTAAAGTATTAGGTTTGGAAAAATATTTTATTATA 43349
Query 201339 TCAAAACAAATTGAAAATATAAGAGGACGAGAAGCAGAAAAATTTAATGAAGAT 201392
|||||||| ||| || || ||| ||||| ||||||||| ||||||||
Sbjct 43350 AGTAAACAAATAGAATATGAAAATGGAAGAGAATTAGAAAAATTACATGAAGAT 43403
>seq1297
Length=178692
Score = 111 bits (122), Expect = 6e-19
Identities = 244/358 (68%), Gaps = 7/358 (2%)
Strand=Plus/Plus
Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301
|||| || || | || || ||||| || | |||||||| || ||||| || | |||
Sbjct 38395 CTCCGGAGGAGGTGTCCTCCATGGTCCTCGCAAAAATGAAGGAGACAGCTGAGAACTAT- 38453
Query 451302 TTGGTTCTCCAGTTACTG-ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360
|||| | || | | | |||| || | ||||| || || || ||||||||||||||
Sbjct 38454 TTGGGCCAGGAGGTTCAGCATGCGGTCGTGACTGTACCTGCATACTTCAATGATGCACAG 38513
Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420
|| || || || ||||||||||| ||||| || | | || | || || | |||
Sbjct 38514 CGCCAGGCTACCAAAGATGCAGGTTCAATTGCAGGACTTCAGGTGTTGCGGATCGTGAAT 38573
Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaa 451479
|||||||| || ||||| |||| ||||| || | ||| | | || |||||||||
Sbjct 38574 GAACCTACGGCCGCTGCGATAGCTTATGGCCTCGACAAA--GAGGGCGACGAGAAGAAAA 38631
Query 451480 -aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTG 451538
| ||| | | || | |||| | || |||||||| ||| || |||| ||||
Sbjct 38632 TATATA-TATGGTCTATGATCTCGGGGGAGGAACCTTTGACGTGTCCCTACTGAACATTG 38690
Query 451539 AAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
|||| || || ||||| | |||||||| ||| || || || || || || || ||
Sbjct 38691 CGCATGGTGTCTTCGAAGTGATGGCAACCAGTGGCGACACCCACCTGGGTGGAGAGGA 38748
>seq897
Length=312193
Score = 95.1 bits (104), Expect = 5e-14
Identities = 236/356 (66%), Gaps = 8/356 (2%)
Strand=Plus/Plus
Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301
|||| || || | || || ||||| || | |||||||| || ||||| || | |||
Sbjct 50087 CTCCGGAGGAGGTGTCCTCCATGGTCCTCGCAAAAATGAAGGAGACAGCTGAGAACTAT- 50145
Query 451302 TTGGTTCTCCAGTTACTG-ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360
|||| | || | | | |||| || | || || || || || ||||||||||||||
Sbjct 50146 TTGGGCCAGGAGGTTCAGCATGCGGTCGTGACAGTACCAGCATACTTCAATGATGCACAG 50205
Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420
|| || || || ||||| ||||| ||||| || | | || | || || | |||
Sbjct 50206 CGCCAGGCTACCAAAGACGCAGGTTCAATTGCAGGACTTCAGGTGTTGCGGATCGTGAAT 50265
Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa 451480
|||||||| || ||||| |||| ||||| || | ||||| || || ||
Sbjct 50266 GAACCTACGGCCGCTGCGATAGCTTATGGCCTCG------ACAAAGAGGGCGACGAGAAG 50319
Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540
|| || | || | |||| | || |||||||| ||| || |||| ||||
Sbjct 50320 AACATCCTGGTCTATGATCTCGGGGGAGGAACCTTTGACGTGTCCCTACTGAACATTGCG 50379
Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
| || || || ||||| | |||||||| ||| || ||||| || || || || ||
Sbjct 50380 AACGGTGTCTTCGAAGTGATGGCAACCAGTGGCGACACTCACCTGGGTGGAGAGGA 50435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975473159014304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |