Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq678 100 4e-16 seq1401 89.7 7e-13 seq185 87.8 2e-12 >seq678 Length=401019 Score = 100 bits (110), Expect = 4e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || ||| || || ||||||| || Sbjct 346122 TCGAAGTCTTCTCCACCCAAGTGGGTGTCGCCGTTGGTGGCCACCACCTCAAAGACTCCG 346181 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | | || ||||| || || ||||| || ||||| | | ||| | | Sbjct 346182 TTGTCAATGGTGAGGAGGGAGACATCGAAGGTTCCACCGCCAAGGTCGTACACGAGGATG 346241 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| ||||| ||| || ||||| || ||||| || || ||||| || || Sbjct 346242 TTCTTCTCG--GTCTT----CTTGTCCAGACCATATGCGATGGCTGCGGCCGTGGGCTCG 346295 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGT 7671 || || |||||||| ||| || ||||||||||| || Sbjct 346296 TTGATGATACGAAGGACA-TTGAGGCCAGCAATTGT 346330 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| | || || | || | | || || |||| | || |||||| Sbjct 346777 CCGATGAGGCGCTTCACGTCGAAGAGGGTCTGAGTAGGATTGATGGTGGCCTGATTCTTC 346836 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 ||||| || ||||| ||||| || | | | ||||| || ||||| || || || | Sbjct 346837 GCCGCCTCTCCGATCAGACGCTCGTCGT---CGGTAAAGGCCACGTAAGAGGGCGTGATA 346893 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 ||||| ||||| ||||||| |||||| ||||| || | || | || ||| |||||| Sbjct 346894 CGATTGCCTTGATCGTTCGGAATAATCTCTACTCGTCCATTCTTGTTGATGCCCACGCAC 346953 Query 8117 GAATACGTTGTTCCT 8131 |||||||| || ||| Sbjct 346954 GAATACGTGGTGCCT 346968 >seq1401 Length=155195 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || || |||||||| ||||| || | || || ||||||| || || || Sbjct 62338 GGCTCGTTGATGATACGAAGCACGTTCATTCCTGAGATGGTGCCCGCATCCTTGGTGGCC 62279 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || ||||| ||||| ||||| ||||||||||| || || || || ||| ||| | Sbjct 62278 TGGCGCTGCGAGTCGTTGAAGTACGCCGGGACCGTAACCACAGCATCGTTGAGCTTCGTG 62219 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || | ||||| | || ||||| || || ||||| || || ||||| || Sbjct 62218 CCGAGGTAGGCCTCCGCCGTCTCCTTCATCTTCAGGAGCACCATGGAGGAGATCTCCTC 62160 >seq185 Length=902495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || ||||| ||||| ||||| || | || || ||||||| || || || || Sbjct 877249 TCGTTGATAATGCGAAGCACGTTCATCCCCGAGATGGTGCCCGCATCCTTGGTGGCCTGG 877308 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||||||||| ||||| || || || || | | ||| | ||| Sbjct 877309 CGCTGCGAGTCGTTGAAGTAGGCCGGCACCGTAACCACGGCATCGTTCAGCTTCGTGCCG 877368 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | ||||| | || ||||| || || ||||| || ||||| ||||| Sbjct 877369 AGGTAAGCCTCCGCAGTCTCCTTCATCTTCAGGAGCACCATGGAGGAAATTTCTTC 877424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || ||||| ||||| ||||| || | || || ||||||| || || || || Sbjct 889416 TCGTTGATAATGCGAAGCACGTTCATCCCCGAGATGGTGCCCGCATCCTTGGTGGCCTGG 889475 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||||||||| ||||| || || || || | | ||| | ||| Sbjct 889476 CGCTGCGAGTCGTTGAAGTAGGCCGGCACCGTAACCACGGCATCGTTCAGCTTCGTGCCG 889535 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | ||||| | || ||||| || || ||||| || ||||| ||||| Sbjct 889536 AGGTAAGCCTCCGCAGTCTCCTTCATCTTCAGGAGCACCATGGAGGAAATTTCTTC 889591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635055885417920