Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1297 91.5 1e-12 seq897 87.8 1e-11 >seq1297 Length=178692 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| | ||||| || || || | || || || ||| | |||| || | || Sbjct 38427 AAAATGAAGGAGACAGCTGAGAACTATT-TGGGCCAGGAGGTTCAGCATGCGGTCGTGAC 38485 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 |||||| ||||| || ||||| |||| || || ||||| |||||||| || ||||| Sbjct 38486 TGTACCTGCATACTTCAATGATGCACAGCGCCAGGCTACCAAAGATGCAGGTTCAATTGC 38545 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 |||||| | || | || || | ||||||||||| || ||||| | || ||||| || Sbjct 38546 AGGACTTCAGGTGTTGCGGATCGTGAATGAACCTACGGCCGCTGCGATAGCTTATGGCCT 38605 Query 550531 TGATAAA 550537 || ||| Sbjct 38606 CGACAAA 38612 >seq897 Length=312193 Score = 87.8 bits (96), Expect = 1e-11 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| | ||||| || || || | || || || ||| | |||| || | || Sbjct 50119 AAAATGAAGGAGACAGCTGAGAACTATT-TGGGCCAGGAGGTTCAGCATGCGGTCGTGAC 50177 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||||||||||| || ||||| |||| || || ||||| ||||| || || ||||| Sbjct 50178 AGTACCAGCATACTTCAATGATGCACAGCGCCAGGCTACCAAAGACGCAGGTTCAATTGC 50237 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 |||||| | || | || || | ||||||||||| || ||||| | || ||||| || Sbjct 50238 AGGACTTCAGGTGTTGCGGATCGTGAATGAACCTACGGCCGCTGCGATAGCTTATGGCCT 50297 Query 550531 TGATAAA 550537 || ||| Sbjct 50298 CGACAAA 50304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028783654867120