Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq5535 544 3e-150 seq5348 134 4e-27 >seq5535 Length=1768 Score = 544 bits (602), Expect = 3e-150 Identities = 1116/1647 (68%), Gaps = 64/1647 (4%) Strand=Plus/Plus Query 45143 CCTTCAAAAGCGGGCtttttttATCTCCCCTCAATTTTTCTGAGAGGATTCGCAGCAATA 45202 |||||||||||||||||||||||| |||||||| | |||||||||||| | |||||| Sbjct 1 CCTTCAAAAGCGGGCTTTTTTTAT-TCCCCTCA---TCACTGAGAGGATTCACGGCAATA 56 Query 45203 ACAGAGGGGGCGTA-ATGTCCGATCCATTAACCGGCACTGGTGCAGTTCTCGGGGGCGGC 45261 | ||||||| || ||||||||||| | | ||||| |||| | || || Sbjct 57 A--GAGGGGGACTAGATGTCCGATCCTGTTTCTGGCACGA---CAGTAGCGGCTGGTGGT 111 Query 45262 CTGTTGGGCTCAGTCCTGTACGGTGTCTTTACTCATACAGATTTCGGCGTGGTGTTTGGA 45321 ||| |||| | | ||| ||| | ||| | ||||| ||| ||||||||||| Sbjct 112 CTGATGGGGGCCAGCATGTTCGGCCTGGCAACTGGCATAGATTACGGTGTGGTGTTTGGT 171 Query 45322 GCGTTTGGTGGTGCGGTGTTTTACGTCGCGACAGCTGCAAACCTTACGCGTGCTCGCCTG 45381 || || | ||||||||||| |||||||| || || | || | | || | ||| Sbjct 172 GCATTCGCCGGTGCGGTGTTCTACGTCGCTACGGCGGTTAATATCAGCCGCCTTAAGCTG 231 Query 45382 GCTGCATATTTTCTGACTTCATTCATTGTTGGAGTGCTAGGCGCCGGGTTTGTTGGCTCA 45441 | | || || | || |||||||| |||| || | ||||| | ||||||| Sbjct 232 GTGGGCTACTTCATCACCTCATTCATCTTTGGCGTTATCGGCGCTCCACTGCTTGGCTCT 291 Query 45442 TGGCT----AAATGCTGCCTCGAGTTAT---GAAAAACCACTGGATGCACTCGGAGCAGT 45494 | | ||||| || | ||| || | ||||| ||||| || || || || Sbjct 292 TACTTCTCCAAATGGA----CGGGGTATAGCGACAGGCCACTTGATGCGCTGGGCGCGGT 347 Query 45495 GATTCTGTCTGCGCTGTGTATAAAAATCCTAACTTTTCTTAATAACCAGGATTTGAACAG 45554 || | | || | ||| || | || || || |||| | |||||||||| || Sbjct 348 AATCGTTGCCGCTATTGCTATTAAGCTGCTGACGTTCGTTAACAGCCAGGATTTGGGTAG 407 Query 45555 CCTGTTCGGCTTTTTCTCACGGTTACGCGGAGGAGGGG---GGAATGGTAAT---TGACC 45608 |||||| || || |||| || ||||| || ||||||| | |||||||| ||| | Sbjct 408 CCTGTTTGGAATTCTCTCGCGTTTACGTGGTGGAGGGGCCAGCAATGGTAACAAGTGATC 467 Query 45609 CGTCAGCTGTCTTTAATGCGTTTATCTGCTCGGTGATCGTCGTCGTTCTGATGTTCTACC 45668 || || | || || |||||| | || ||||| | | ||||||||||||| Sbjct 468 CGAGTGCGATGGCAAACGCAATTATCTCTGCTGTTATCGTTATTGCACTGATGTTCTACC 527 Query 45669 AGCGCCATGGTGCCCGGCACCGTCCTTTCATCTCAATCCTGGCGTATATAACCATCCTGG 45728 ||||| || || | || || ||| | || || | |||| ||| | || | |||| Sbjct 528 AGCGCGGCGGGGCGAGACATCGCCCTCTGATATCGCTGATGGCTTATTTCACGGTGCTGG 587 Query 45729 TTTACGCCGTAATCCCGTGGCAATTCATCTTCGGCCTCTATCGTGACTCCAGTTGGCTGG 45788 | |||||| |||| | | | | | |||||||| || | ||| || ||| | | Sbjct 588 TATACGCCAGCGTCCCTTTCCGTTACCTGTTCGGCCTGTACCATGAATCGCACTGGTTTG 647 Query 45789 TGGTGGTGGCAAACCTCCTGATATGCGCAGCTGTTATGAAGGTCCGGGGAAATCTGGCGC 45848 ||||| ||| ||| ||||||||||||| || ||| | || |||||||| | |||| Sbjct 648 TGGTGCTGGTGAACGTCCTGATATGCGCTGCCGTTCTCTGGGCTCGGGGAAACGTAGCGC 707 Query 45849 GTCTGGTTGATCTTCTGAGGCACTAATGAACCAAATACTATTTCAAAAGGCGGCAGGTAT 45908 ||||||||||| |||||||||||||||||||| || ||||||||||||||| || | Sbjct 708 GTCTGGTTGATGCACTGAGGCACTAATGAACCAATCACAATTTCAAAAGGCGGCTGGGCT 767 Query 45909 AAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATGAAGGAATTCGG 45968 |||||||| |||| | |||||||||||| || || |||||||| || ||||| Sbjct 768 AAGCGCCGAGTTAGCTGCGCGCTGGTTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGG 827 Query 45969 CATAACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCCACGAGTCCGGCGG 46028 ||| ||| |||| | || ||||| ||||| ||||| ||| || || || || | || Sbjct 828 CATCACCAAGCCGGTAGACCAGGCGATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGG 887 Query 46029 CTTCACCCGGCTGGTGGAAAACCTGAACTATTCG----GCAGAAAACCTGGT-ATCTACG 46083 |||||| | ||| ||||||| | | |||||| || || | | ||||| | || | Sbjct 888 CTTCACTCTGCTCGTGGAAAGCTTCAACTAT-CGCATTGCTGGA---CTGGTTAACTTCA 943 Query 46084 TTTGGCAAGCATCGCATTACTGCACAGCAGGCCGCCGCACTCGG--------CAGAACGG 46135 | | | | ||| | |||||| | ||||| ||| || || | ||| | Sbjct 944 TCCGTGCTGGA-CGCCTCACTGCAGACCAGGCTAACGCGCTTGGGCGTCGTCCTGAAGAG 1002 Query 46136 C-AACGCAACCGGCAAATCAAAAA---GCGATAGCCAATCTGGTTTATGGCGGTGAGTGG 46191 | ||| |||| | | | || || || || ||||| || || Sbjct 1003 CGAACATTACCGATTGAGCGCCAGCGCGCCATTGCGAACCTGGTATACAGC--------- 1053 Query 46192 GGCAAAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGC 46251 ||| | | |||| ||| | | | ||||| |||||| || || || || || Sbjct 1054 ----AAACGCA--TGGGGAACAACGCACCCGGTGACGGCTGGTTTTACCGTGGGCGTGGG 1107 Query 46252 CTGAAGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGAC 46311 || | || || ||||| |||| || ||||| | ||||| ||| |||||| | || Sbjct 1108 CTTATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAACGGCCTGAAGGTTGAT 1167 Query 46312 CTTGTAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGG 46371 || |||| |||||||| | | | | || | || || || | ||| || ||| Sbjct 1168 CTGGTAAAGCAGCCTGAGCTATTAGCCGAAGACGTTTACGCAGCCAGAAGCGCGGCGTGG 1227 Query 46372 TTCTATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTT 46431 |||| | | | | ||||||||| ||||||||||| || || |||||| | || Sbjct 1228 TTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGACCTGCTGCAGGTGACGAAGATT 1287 Query 46432 ATCAACGGCGGCCGTAACGGGCTGGAACAACGGCGCACCCTGTTTAACCTGGCGAAATCT 46491 ||||||||||| |||||||| ||| | || || | | || | | || ||| | Sbjct 1288 ATCAACGGCGGAACGAACGGGCTTGAAGATCGTCGTGCTCGCTTCAGTCAAGCCAAAACC 1347 Query 46492 GTGCTGGTGTGAGGTCACTATGGGGTTTGAAACTTTAATTGGTATTGCTGCAGCAGTCAT 46551 || |||||||||||| ||||||| ||||||| | |||||| ||||||| || || Sbjct 1348 GTACTGGTGTGAGGTTGATATGGGGATTGAAACAATCATTGGTCTTGCTGCCTTGGTAAT 1407 Query 46552 TGCCGCCATCGCTGGCGCTTTCGGCCTGGGCCATATTCGCGGCTCAAGCAAAGCAGAAGC 46611 || || ||||| || ||||| || | |||||| ||||||| | |||||||||||||| Sbjct 1408 GGCTGCTATCGCCGGTGCTTTTGGTATTGGCCATTCTCGCGGCACCAGCAAAGCAGAAGC 1467 Query 46612 AAAAGCAGTTCAGCAGCGCACCGAAGATAACGCAGCTGCAACGGTCGCAGCAGCAGATCG 46671 ||||| | |||||||||||| ||||| || ||||| || || | |||| ||| || | Sbjct 1468 GAAAGCTGATCAGCAGCGCACTGAAGAAAAGGCAGCAGCCACTGAAGCAGTAGCCGAACA 1527 Query 46672 CCGTGTAGAGACAACGAAAGAGGCCAGCAATGTACAGCAAACTGTTAACCATATGTCTGG 46731 ||| || || ||| ||||||||||||||||||||||| |||||||||| |||| ||| Sbjct 1528 CCGGGTTGAAGTAACCAAAGAGGCCAGCAATGTACAGCAGACTGTTAACCGTATGCCTGA 1587 Query 46732 CGATGATGTTGATCGCGAGCTGCGCGA 46758 || ||||||||||||||| |||| || Sbjct 1588 TGACGATGTTGATCGCGAGTTGCGTGA 1614 >seq5348 Length=1880 Score = 134 bits (148), Expect = 4e-27 Identities = 182/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 34470 ATTTATTTTTGTAA-ATCATGAGTGCTATGCTCACAAAAACAGCAGGAGGGATGTGC--A 34526 |||||||||| | | || |||| || |||| | | | ||||| ||| |||| ||| | Sbjct 868 ATTTATTTTTATCAGATAATGA-TGTTATGATTAAATAAACATCAGAAGGGGCGTGTTAA 926 Query 34527 TGGTTCTGGATGAAGAGCGTATAAGCATGAAAATTCAGGCGATGGGGCGGGCGGTGATGG 34586 ||| | |||| || || | | ||||||| |||| || ||||| ||||||| |||| Sbjct 927 TGGATTTGGACGATGAAAGGGTGAGCATGATTGTTCATGCTATGGGCAGGGCGGTTATGG 986 Query 34587 AATTGTCACTGGCTGATTTACCCATGACCCAGCAAAACATCATCGACAAGCTGGAGCAGT 34646 | || || || | ||| ||| |||| ||| || |||||||| ||| |||| || | Sbjct 987 ATTTATCGCTATCAGATCAACCAGTGACGCAGGAAGCTATCATCGAGAAGTTGGAACACT 1046 Query 34647 ACCGGAAGGAAACAGGAAACGTGATAGGGAAGGGCGTGAACAGGGATGCGGCTGAGATAG 34706 | || | || ||||| || ||||| || ||||| || ||||||||||| || ||||||| Sbjct 1047 ATCGCAGAGAGACAGGCAATGTGATCGGCAAGGGAGTTAACAGGGATGCTGCGGAGATAG 1106 Query 34707 TGTGGAAAGG 34716 || || |||| Sbjct 1107 TGAGGGAAGG 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158503362882528