Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq5535 316 5e-82 seq5348 127 5e-25 seq2600 91.5 4e-14 >seq5535 Length=1768 Score = 316 bits (350), Expect = 5e-82 Identities = 396/543 (73%), Gaps = 0/543 (0%) Strand=Plus/Plus Query 25665 GCCGCGCGCTGGTTTCCGCATATTACTACTGCCATGAATGAGTTTGGCATTACCAAACCA 25724 || ||||||||||||| || | | | || ||||| ||||| ||||| ||||| || Sbjct 781 GCTGCGCGCTGGTTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCG 840 Query 25725 GATGACCAGGCAATGTTTATCGCACAGGTCGGGCATGAGTCCGGAGGATTTACCCGGTTA 25784 | |||||||| ||||| ||||| |||| |||||||| || | || || || | | | Sbjct 841 GTAGACCAGGCGATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTC 900 Query 25785 CAGGAAAACTTTAACTACAGCGTTAACGGACTGTCCGGGTTTATCCGTGCCGGGCGCATC 25844 ||||| ||| ||||| || || |||||| || |||||||| || ||| || Sbjct 901 GTGGAAAGCTTCAACTATCGCATTGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTC 960 Query 25845 ACTCCAGACCAGGCCAACGCACTTGGCCGGAAAACATATGAGAAGTCTCTTCCTCTGGAA 25904 ||| |||||||||| ||||| ||||| || | | ||| | | || | || Sbjct 961 ACTGCAGACCAGGCTAACGCGCTTGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAG 1020 Query 25905 CGCCAGCGCGCGATCGCCAATCTTGTTTACAGCAAGCGCATGGGAAATAACGGCCCGGGC 25964 ||||||||||| || || || || || |||||||| |||||||| || |||| || || Sbjct 1021 CGCCAGCGCGCCATTGCGAACCTGGTATACAGCAAACGCATGGGGAACAACGCACCCGGT 1080 Query 25965 GACGGGTGGAATTATCGCGGTCGTGGACTTATCCAGATCACTGGTCTGAACAACTACCGG 26024 ||||| ||| ||| || || ||||| ||||||||||| || || || || |||||||| Sbjct 1081 GACGGCTGGTTTTACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAATAACTACCGT 1140 Query 26025 GATTGCGGTAATGGTCTGAAGGTTGATCTAGTCGCTCAGCCTGAACTGCTGGCGCAGGAT 26084 ||||| || || || |||||||||||||| || |||||||| || | || | || Sbjct 1141 GATTGTGGGAACGGCCTGAAGGTTGATCTGGTAAAGCAGCCTGAGCTATTAGCCGAAGAC 1200 Query 26085 GAATACGCGGCCAGAAGCGCGGCATGGTTCTTCTCCAGTAAAGGTTGCATGAAGTACACC 26144 | ||||| |||||||||||||| ||||||||| ||| ||| || ||| ||||||| || Sbjct 1201 GTTTACGCAGCCAGAAGCGCGGCGTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCC 1260 Query 26145 GGTGACCTGGTGCGCGTCACGCAGATTATCAATGGTGGCCAGAACGGTATCGACGACCGG 26204 || |||||| ||| || ||| |||||||||| || || |||||| | || || || Sbjct 1261 GGCGACCTGCTGCAGGTGACGAAGATTATCAACGGCGGAACGAACGGGCTTGAAGATCGT 1320 Query 26205 CGT 26207 ||| Sbjct 1321 CGT 1323 >seq5348 Length=1880 Score = 127 bits (140), Expect = 5e-25 Identities = 131/164 (80%), Gaps = 13/164 (8%) Strand=Plus/Plus Query 3019 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGATGGTGAGTCGTC-ATGTCCGTG 3077 |||||||||||||||||||||||||| ||||||||| |||||| |||| || | || Sbjct 137 CCTCGTCTCTTCCGAGGTGTCACACCTGATCGCCACGCTGGTGAAACGTCTCTGGCTGT- 195 Query 3078 CTTACCTGAC-ACTGGCTTGCACATTCCGGCTACCC---GGCTGGGGAAGTAGCATCAAG 3133 | ||| || ||||||||||||||||||||||||| || | |||| || | ||| Sbjct 196 CGTAC---ACAACTGGCTTGCACATTCCGGCTACCCGCTGGATCGGGATACTGCCT-AAG 251 Query 3134 GGAACCCATCCGGACCGCTGCGGCACATGTGCCATATGCCGTAC 3177 | | || |||||||||| ||||||||||||||||| |||||| Sbjct 252 GAATCC---CCGGACCGCTACGGCACATGTGCCATATACCGTAC 292 >seq2600 Length=11323 Score = 91.5 bits (100), Expect = 4e-14 Identities = 167/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 36112 ACGGGCCAGATGAATAAAACCGAATCAGCTTACTGCCAGCACCTTGAGCTGCGTAAGCAC 36171 |||||| ||||||||||| ||| || ||| | | || || | ||||| ||| Sbjct 10670 ACGGGCACAATGAATAAAACAGAAGCACGCTACGCCGAACATCTGAAATGGCGTATGCAT 10729 Query 36172 GCAGGGGAAATCGCCTGGTACCGGTTCGAAGGTATCAAGCTGCGCCTGGCTGATAACACG 36231 || || ||| ||||||||| | ||||||| ||||| |||||||| || || || || Sbjct 10730 GCTGGTGAAGTCGCCTGGTTCAAGTTCGAATCAATCAAACTGCGCCTTGCCGACAAAACA 10789 Query 36232 TTCTACACGCCGGACTTCGCAGTGATGCTAACCAGTGGTGAGATGGAACTGCACGAGGTG 36291 || || ||||||| || ||||| ||| ||||| |||| |||| || ||| Sbjct 10790 ACGTATACAGCGGACTTTTTCGTCATGCTGACCTCGGGTGATCTGGAGGTGCATGAAGTG 10849 Query 36292 AAAGGATTCTGGACCGACGACGCCAGGGTGAAAACCAAAGTCGCAGCAGACCAGTACCCG 36351 ||||| ||| || ||||| || || || | || | |||||||| || || || Sbjct 10850 AAAGGGCATTGGGAAGAGGACGCGAGAGTCAAGATAAAGCTTGCAGCAGAACACTATCCT 10909 Query 36352 TTTCG 36356 || || Sbjct 10910 TTCCG 10914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123652972706976