Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq342 95.1 9e-15 seq662 91.5 1e-13 >seq342 Length=642287 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || || ||| || || || || ||||||||||| || | || || Sbjct 475608 CGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCG 475667 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || || || ||||| ||||| || || | || | ||| |||||| Sbjct 475668 TCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTG 475727 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | | | || ||||| || |||| || ||| Sbjct 475728 TCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACGTCCAAGGTGATC 475787 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| || || ||||| |||||||| Sbjct 475788 GTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| |||||| || || || || || || || ||||||||||| Sbjct 475824 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 475883 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 475884 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475943 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | | || ||||| || Sbjct 475944 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476003 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 476004 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476050 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| |||||| || || || || || || || ||||||||||| Sbjct 476052 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476111 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 476112 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476171 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | | || ||||| || Sbjct 476172 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476231 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 476232 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476278 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| |||||| || || || || || || || ||||||||||| Sbjct 476280 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476339 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || ||||| ||||| || || | || Sbjct 476340 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476399 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | | || ||||| || Sbjct 476400 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 476459 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 476460 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476506 >seq662 Length=408752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| || || || || ||||| || || || | | Sbjct 148100 AGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTT 148041 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| ||||| || |||| || | ||| ||| Sbjct 148040 CCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCC 147981 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || ||||| || |||| |||| Sbjct 147980 TTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTA 147921 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||| || || || || |||||||| Sbjct 147920 ATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| || || || || ||||| || || || | | Sbjct 148328 AGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTT 148269 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| ||||| || |||| || | ||| ||| Sbjct 148268 CCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCC 148209 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || ||||| || |||| |||| Sbjct 148208 TTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTA 148149 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||| || || || || |||||||| Sbjct 148148 ATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| || || || || ||||| || || || | | Sbjct 148556 AGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTT 148497 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| ||||| || |||| || | ||| ||| Sbjct 148496 CCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCC 148437 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || ||||| || |||| |||| Sbjct 148436 TTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTA 148377 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||| || || || || |||||||| Sbjct 148376 ATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| || || || || ||||| || || || | | Sbjct 148784 AGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTT 148725 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || |||| ||||| || |||| || | ||| ||| Sbjct 148724 CCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCC 148665 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || ||||| || |||| |||| Sbjct 148664 TTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTA 148605 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||| || || || || |||||||| Sbjct 148604 ATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148567 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || || ||| || || || || || ||||| || || | | || Sbjct 149009 CGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATCGGAAAGTGTCCTTCCG 148950 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| || || || |||| ||||| || |||| || | ||| |||||| Sbjct 148949 TCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTG 148890 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | | | || ||||| || |||| ||||||| Sbjct 148889 TCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATC 148830 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||||| || || || || |||||||| Sbjct 148829 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380892621745224