Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq5535 342 1e-89 >seq5535 Length=1768 Score = 342 bits (378), Expect = 1e-89 Identities = 429/586 (73%), Gaps = 2/586 (0%) Strand=Plus/Plus Query 40043 ACAATTCCAGCGAGCTGCTGGTATTAGCGAGGCGTTGGCCGCACGCTGGTTCTCGCATAT 40102 |||||| || || ||||| | |||| | ||| || || |||||||| || | Sbjct 744 ACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTGGTTTCAGCCAGT 803 Query 40103 AACTTCTGCGATGAAAGAGTTTGGTATCAGCAAAACCGAAGATCAGGCAATGTTTATTGC 40162 | | || ||||||||||| || |||| ||| | | ||| ||||| ||||| || || Sbjct 804 CAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCGATGTTCATCGC 863 Query 40163 TCAGGTCGGGCATGAGTCTGGTGGTTTCACCCGGTTGCAGGAGAATTTCAACTACAGTGT 40222 ||||| |||||||| || | ||| ||||| | | | ||| | |||||||| | | Sbjct 864 TCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTTCAACTATCGCAT 923 Query 40223 CAGCGGTCTAGCTAACTTCGTTCGGGCTGGGCGTCTCACTCAGGGGCAGGCTAATGCACT 40282 || || | ||||||| | || ||||| || |||||| | |||||||| || || Sbjct 924 TGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCAGGCTAACGCGCT 983 Query 40283 GGGTCGCCGTGCTGGTGAACCACCATTGCCACTTGAGCGCCAGCGCGCGATCGCAAATCT 40342 || || ||| ||| || | | |||| || |||||||||||||||| || || || || Sbjct 984 TGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGCCATTGCGAACCT 1043 Query 40343 GGTATACAGCAAACGCATGGGTAACAATGCTCCCGGCGATGGCTGGAATTACCGTGGGCG 40402 ||||||||||||||||||||| ||||| || ||||| || |||||| |||||||||||| Sbjct 1044 GGTATACAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTTTTACCGTGGGCG 1103 Query 40403 CGGGCTTATCCAGATTACCGGTTTGAATAACTATCGTGACTGTGGAAACGGTCTGAAAGT 40462 |||||||||||||||||||| | |||||||| ||||| ||||| ||||| ||||| || Sbjct 1104 TGGGCTTATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAACGGCCTGAAGGT 1163 Query 40463 TGACCTGCTGGAGAATCCTGAACTGCTGGCGCAGGACGAATACGCGGCTCGTAGCGCGGC 40522 ||| ||| | || | ||||| || | || | |||| ||||| || | |||||||| Sbjct 1164 TGATCTGGTAAAGCAGCCTGAGCTATTAGCCGAAGACGTTTACGCAGCCAGAAGCGCGGC 1223 Query 40523 GTGGTTCTTCTCCGGCAAAGGCTGCATGAAGTATACCGGCGATATTGCT-CGTGTAACTC 40581 |||||||||| || || || ||| |||||||| ||||||| |||| | || || Sbjct 1224 GTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGA-CCTGCTGCAGGTGACGA 1282 Query 40582 TGATTATCAATGGTGGCAGGAACGGCATAGACGACCGGCGAGCGCG 40627 ||||||||| || || | |||||| | || || || || || || Sbjct 1283 AGATTATCAACGGCGGAACGAACGGGCTTGAAGATCGTCGTGCTCG 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143170727028576