Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq4617 179 8e-41 >seq4617 Length=2647 Score = 179 bits (198), Expect = 8e-41 Identities = 221/298 (74%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 25263 CGCAGACGGTAATGAGGAAACAACGGTTAAAAACATTGCATTTAATTACATAGTGAGGCT 25322 ||||| ||||||| || | || ||||||||||| || ||||||||||| ||||| || Sbjct 1659 CGCAGCTGGTAATGCTGAGAACACCGTTAAAAACATCGCCTTTAATTACATTGTGAGACT 1600 Query 25323 TGCATAATGACTTTTAAAATGAGCAGCAAAGCGCGGACAATTACGATTTATAACCTGCGT 25382 |||||||||||||||||| | |||| || |||||| |||||||||||||| Sbjct 1599 TGCATAATGACTTTTAAATTTTCTGATAAAGACCGAACAATTCGAATTTATAACCTGCGA 1540 Query 25383 TCAGATACGAATGAATTTATTGGGGCAGGTGATGCGTATATACCGCCACACACGGGATTA 25442 ||||||| ||||||||| || || |||||||| ||||| ||| | ||||||||| Sbjct 1539 GCAGATACCCGTGAATTTATCGGTGCGGGTGATGCTTATATTCCGGCCGGGACGGGATTA 1480 Query 25443 CCGGCAAACTGTACGGATATTGCACCCCCTGATATTCCCGCCAGTCAT-ATTGCTGTATT 25501 || || |||| || |||||||| || ||||||| || | || | || ||||||||| Sbjct 1479 CCAGCTGACTGCACAGATATTGCGCCGCCTGATA-TCGCACCGGGTATGGCTGCTGTATT 1421 Query 25502 TGACGCTGAAACCGAAATGTGGAGTCTGCATGAGGACCACCGTGGCGAGACGGTTTAC 25559 | ||| ||| ||| ||| || |||||||||| ||| || ||||| ||| Sbjct 1420 TAACG--GAA----AAAAATGGTCGCTTTATGAGGACCATCGTAATGATACGGTATAC 1369 Score = 105 bits (116), Expect = 1e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 24794 TTCCGTGGCCGTCTGACACCATCCCTGCTGGTTACGCCCTGATGCAGGGGCAAGCATTTG 24853 |||| |||||||| ||||| || || || || | ||| ||| ||||| |||| Sbjct 2290 TTCCATGGCCGTCCGACACAGCGCCATACGGATATGCAATTATGGCGGGACAAGCCTTTG 2231 Query 24854 ATAAGAACGTTTATCCCTTACTGGCAATAGCATATCCATCCGGCACTATTCCGGACATGC 24913 |||| | | |||||| | || || || ||||| || |||| ||||| || |||| Sbjct 2230 ATAAAACTGCTTATCCACTCCTTGCGGCGGCCTATCCTTCAGGCATCATTCCCGATATGC 2171 Query 24914 GCGGCTGGACAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTATCTCAGGAGCTGG 24973 | |||||||| || || || || || || ||||| | || ||||| || ||||||| || Sbjct 2170 GGGGCTGGACGATTAAGGGTAAACCTGCCAGCGGAAGGGCGGTGCTGTCACAGGAGCAGG 2111 Query 24974 ATGGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAG 25033 | || | |||||||| | || | || || |||||||||||| |||||| Sbjct 2110 ACGGTATTAAATCGCATACCCATGGTGCTTCTGCTTCCTCTACCGATCTGGGTACGAAAA 2051 Query 25034 GTACGTCGTCATTTGATTACGGAACGAA 25061 ||| | ||||| ||||| ||||| Sbjct 2050 ATACCAGCGCTTTTGACTACGGTACGAA 2023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109040254020624