Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_019721.1
Length=40029
Score E
Sequences producing significant alignments: (Bits) Value
seq5535 2233 0.0
seq5348 239 1e-58
>seq5535
Length=1768
Score = 2233 bits (2476), Expect = 0.0
Identities = 1466/1615 (91%), Gaps = 2/1615 (0%)
Strand=Plus/Plus
Query 34406 GGCCTTTTTTGTTTCCCCTCAAT-CTGAGAGGACTCACGGCAATAAGAGGGGG-CTAAAT 34463
|| ||||||| ||||||||| ||||||||| ||||||||||||||||||| ||| ||
Sbjct 12 GGGCTTTTTTTATTCCCCTCATCACTGAGAGGATTCACGGCAATAAGAGGGGGACTAGAT 71
Query 34464 GTCCGATCCTGTTTCTGGCACTACGGTAGCTGCTGGTGGTCTGATGGGGGCCAGCATGTT 34523
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 72 GTCCGATCCTGTTTCTGGCACGACAGTAGCGGCTGGTGGTCTGATGGGGGCCAGCATGTT 131
Query 34524 CGGCCTGGCAACCGGCATAGATTACGGTGTGGTGTTTGGCGCATTCGCTGGCGCGGTGTT 34583
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 132 CGGCCTGGCAACTGGCATAGATTACGGTGTGGTGTTTGGTGCATTCGCCGGTGCGGTGTT 191
Query 34584 CTACGTCGCTACGGCGGTTAATATCAGCCGCCTTAAGCTGGTGGGTTACTTCATCACCTC 34643
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 192 CTACGTCGCTACGGCGGTTAATATCAGCCGCCTTAAGCTGGTGGGCTACTTCATCACCTC 251
Query 34644 ATTCATCTTCGGCGTTATCGGCGCGCCACTGCTTGGCTCTTATTTCTCCAAATGGACGGG 34703
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 252 ATTCATCTTTGGCGTTATCGGCGCTCCACTGCTTGGCTCTTACTTCTCCAAATGGACGGG 311
Query 34704 GTATAGCGACAGGCCACTTGATGCGCTGGGCGCGGTAATAGTTGCCGCAGTGGCTATTAA 34763
||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 312 GTATAGCGACAGGCCACTTGATGCGCTGGGCGCGGTAATCGTTGCCGCTATTGCTATTAA 371
Query 34764 GCTGCTGACGTTCGTCAACAGTCAGGATTTGGGTAGCCTGTTTGGAATTCTCTCTCGCTT 34823
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 372 GCTGCTGACGTTCGTTAACAGCCAGGATTTGGGTAGCCTGTTTGGAATTCTCTCGCGTTT 431
Query 34824 ACGTGGAGGAGGGGCCAGCAATGGTAACAAGTGATCCGAGTGCGATGGTGAACGCCGTTA 34883
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 432 ACGTGGTGGAGGGGCCAGCAATGGTAACAAGTGATCCGAGTGCGATGGCAAACGCAATTA 491
Query 34884 TTTGCGGCGTAATCGTCCTTGTCCTGATGTTCTACCAGCGAGGTGGGGCGAGACATCGCC 34943
| | | || ||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 492 TCTCTGCTGTTATCGTTATTGCACTGATGTTCTACCAGCGCGGCGGGGCGAGACATCGCC 551
Query 34944 CACTGATCTCGCTGATGGCTTATTTCACGGTTCTGGTATACGCCAGCGTTCCTTTCCGTT 35003
| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 552 CTCTGATATCGCTGATGGCTTATTTCACGGTGCTGGTATACGCCAGCGTCCCTTTCCGTT 611
Query 35004 ATCTGTTCGGCCTGTACCATGAATCGCACTGGTTTGTGGTGCTGGTGAACGTCCTGATAT 35063
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ACCTGTTCGGCCTGTACCATGAATCGCACTGGTTTGTGGTGCTGGTGAACGTCCTGATAT 671
Query 35064 GCGCTGCCGTTCTCTGGGCTCGGGGAAACGTGGCGCGTCTGGTTGATGCACTGAGGCACT 35123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 672 GCGCTGCCGTTCTCTGGGCTCGGGGAAACGTAGCGCGTCTGGTTGATGCACTGAGGCACT 731
Query 35124 AATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTG 35183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTG 791
Query 35184 GTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATTACCAAGCCGGTAGACCAGGC 35243
|||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||
Sbjct 792 GTTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGC 851
Query 35244 CATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTGGAGAGCTT 35303
|||||||| || |||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 852 GATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTT 911
Query 35304 CAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACCGCAGAACA 35363
||| || || ||||| | ||| ||||||||||| ||||| |||||||| || ||||| ||
Sbjct 912 CAACTATCGCATTGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCA 971
Query 35364 GGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGCCAGCGAGC 35423
||| |||||| | || || || |||||||| || ||||||||||||||||||||||| ||
Sbjct 972 GGCTAACGCGCTTGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGC 1031
Query 35424 CATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGACGGCTGGTT 35483
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1032 CATTGCGAACCTGGTATACAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTT 1091
Query 35484 ATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGATTGTGGAAA 35543
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1092 TTACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAA 1151
Query 35544 CGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTATACGCGGC 35603
||||||||| ||||||||||| ||||| ||| || | | || |||||||| ||||| ||
Sbjct 1152 CGGCCTGAAGGTTGATCTGGTAAAGCAGCCTGAGCTATTAGCCGAAGACGTTTACGCAGC 1211
Query 35604 AAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGCGACCTGAT 35663
||||| ||||| |||||||| | ||||||||| ||||| || |||| ||||||||| |
Sbjct 1212 CAGAAGCGCGGCGTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGACCTGCT 1271
Query 35664 GCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGCGCTCGCTT 35723
|| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1272 GCAGGTGACGAAGATTATCAACGGCGGAACGAACGGGCTTGAAGATCGTCGTGCTCGCTT 1331
Query 35724 CGGTCAGGCCAAAACAGTACTGGTATGAGGTTGATATGGGTTTAGAAACGATAATCGGTA 35783
| |||| |||||||| |||||||| ||||||||||||||| | ||||| || || |||
Sbjct 1332 CAGTCAAGCCAAAACCGTACTGGTGTGAGGTTGATATGGGGATTGAAACAATCATTGGTC 1391
Query 35784 TTGCTGCACTTGTTATGGCTGCTATCGCTGGTGCCTTTGGCATTGGCCATTCACGCGGCA 35843
||||||| | || |||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct 1392 TTGCTGCCTTGGTAATGGCTGCTATCGCCGGTGCTTTTGGTATTGGCCATTCTCGCGGCA 1451
Query 35844 CCAGCAAAGCGGAAGCCAAAGCAGACCAGCAGCGCACCGAAGAAAAGGCCGCAGCCACTG 35903
|||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||||||||||
Sbjct 1452 CCAGCAAAGCAGAAGCGAAAGCTGATCAGCAGCGCACTGAAGAAAAGGCAGCAGCCACTG 1511
Query 35904 AAGCAGTAGCCGAACGCCGGGTAGAAGCAACGAAAGAGGCCAGCAATGTACAGCAGACTG 35963
||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1512 AAGCAGTAGCCGAACACCGGGTTGAAGTAACCAAAGAGGCCAGCAATGTACAGCAGACTG 1571
Query 35964 TTAACCACATGCCTGATGACGATGTTGATCGCGAGCTGCGTGACACGTGGAAGCG 36018
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1572 TTAACCGTATGCCTGATGACGATGTTGATCGCGAGTTGCGTGACACGTGGAAGCG 1626
>seq5348
Length=1880
Score = 239 bits (264), Expect = 1e-58
Identities = 149/159 (94%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTCTCTGGCTGTC 27722
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 137 CCTCGTCTCTTCCGAGGTGTCACACCTGATCGCCACGCTGGTGAAACGTCTCTGGCTGTC 196
Query 27723 GTACACAACTGTCTTGCACATTCCGGCTACCCGCTGGATCTGGATACTG--AAAGGAATC 27780
||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 197 GTACACAACTGGCTTGCACATTCCGGCTACCCGCTGGATCGGGATACTGCCTAAGGAATC 256
Query 27781 CACGGACCGCTGCGGCACATGTGCCATATACCGTACTGC 27819
| ||||||||| |||||||||||||||||||||||||||
Sbjct 257 CCCGGACCGCTACGGCACATGTGCCATATACCGTACTGC 295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127956477553296
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