Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq5535 2233 0.0 seq5348 239 1e-58 >seq5535 Length=1768 Score = 2233 bits (2476), Expect = 0.0 Identities = 1466/1615 (91%), Gaps = 2/1615 (0%) Strand=Plus/Plus Query 34406 GGCCTTTTTTGTTTCCCCTCAAT-CTGAGAGGACTCACGGCAATAAGAGGGGG-CTAAAT 34463 || ||||||| ||||||||| ||||||||| ||||||||||||||||||| ||| || Sbjct 12 GGGCTTTTTTTATTCCCCTCATCACTGAGAGGATTCACGGCAATAAGAGGGGGACTAGAT 71 Query 34464 GTCCGATCCTGTTTCTGGCACTACGGTAGCTGCTGGTGGTCTGATGGGGGCCAGCATGTT 34523 ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 72 GTCCGATCCTGTTTCTGGCACGACAGTAGCGGCTGGTGGTCTGATGGGGGCCAGCATGTT 131 Query 34524 CGGCCTGGCAACCGGCATAGATTACGGTGTGGTGTTTGGCGCATTCGCTGGCGCGGTGTT 34583 |||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 132 CGGCCTGGCAACTGGCATAGATTACGGTGTGGTGTTTGGTGCATTCGCCGGTGCGGTGTT 191 Query 34584 CTACGTCGCTACGGCGGTTAATATCAGCCGCCTTAAGCTGGTGGGTTACTTCATCACCTC 34643 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 192 CTACGTCGCTACGGCGGTTAATATCAGCCGCCTTAAGCTGGTGGGCTACTTCATCACCTC 251 Query 34644 ATTCATCTTCGGCGTTATCGGCGCGCCACTGCTTGGCTCTTATTTCTCCAAATGGACGGG 34703 ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 252 ATTCATCTTTGGCGTTATCGGCGCTCCACTGCTTGGCTCTTACTTCTCCAAATGGACGGG 311 Query 34704 GTATAGCGACAGGCCACTTGATGCGCTGGGCGCGGTAATAGTTGCCGCAGTGGCTATTAA 34763 ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 312 GTATAGCGACAGGCCACTTGATGCGCTGGGCGCGGTAATCGTTGCCGCTATTGCTATTAA 371 Query 34764 GCTGCTGACGTTCGTCAACAGTCAGGATTTGGGTAGCCTGTTTGGAATTCTCTCTCGCTT 34823 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct 372 GCTGCTGACGTTCGTTAACAGCCAGGATTTGGGTAGCCTGTTTGGAATTCTCTCGCGTTT 431 Query 34824 ACGTGGAGGAGGGGCCAGCAATGGTAACAAGTGATCCGAGTGCGATGGTGAACGCCGTTA 34883 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 432 ACGTGGTGGAGGGGCCAGCAATGGTAACAAGTGATCCGAGTGCGATGGCAAACGCAATTA 491 Query 34884 TTTGCGGCGTAATCGTCCTTGTCCTGATGTTCTACCAGCGAGGTGGGGCGAGACATCGCC 34943 | | | || ||||| ||| ||||||||||||||||| || |||||||||||||||| Sbjct 492 TCTCTGCTGTTATCGTTATTGCACTGATGTTCTACCAGCGCGGCGGGGCGAGACATCGCC 551 Query 34944 CACTGATCTCGCTGATGGCTTATTTCACGGTTCTGGTATACGCCAGCGTTCCTTTCCGTT 35003 | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 552 CTCTGATATCGCTGATGGCTTATTTCACGGTGCTGGTATACGCCAGCGTCCCTTTCCGTT 611 Query 35004 ATCTGTTCGGCCTGTACCATGAATCGCACTGGTTTGTGGTGCTGGTGAACGTCCTGATAT 35063 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 ACCTGTTCGGCCTGTACCATGAATCGCACTGGTTTGTGGTGCTGGTGAACGTCCTGATAT 671 Query 35064 GCGCTGCCGTTCTCTGGGCTCGGGGAAACGTGGCGCGTCTGGTTGATGCACTGAGGCACT 35123 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 672 GCGCTGCCGTTCTCTGGGCTCGGGGAAACGTAGCGCGTCTGGTTGATGCACTGAGGCACT 731 Query 35124 AATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTG 35183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 AATGAACCAATCACAATTTCAAAAGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTG 791 Query 35184 GTTTCAGCCAGTCACCGATGCGATGAAAGAATTCGGCATTACCAAGCCGGTAGACCAGGC 35243 |||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| Sbjct 792 GTTTCAGCCAGTCAGTGACGCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGC 851 Query 35244 CATGTTCATTGCGCAGGTTGGGCATGAATCAGCTGGCTTCACTCTCCTGGTGGAGAGCTT 35303 |||||||| || |||| |||||||||||||||||||||||||| || ||||| ||||| Sbjct 852 GATGTTCATCGCTCAGGCAGGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTT 911 Query 35304 CAATTACCGGATTGCCGCACTAGTTAACTTCATTCGTGCAGGACGCCTTACCGCAGAACA 35363 ||| || || ||||| | ||| ||||||||||| ||||| |||||||| || ||||| || Sbjct 912 CAACTATCGCATTGCTGGACTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCA 971 Query 35364 GGCAAACGCGTTAGGCCGCCGCCCTGAAGAACGGACATTACCGATTGAGCGCCAGCGAGC 35423 ||| |||||| | || || || |||||||| || ||||||||||||||||||||||| || Sbjct 972 GGCTAACGCGCTTGGGCGTCGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGC 1031 Query 35424 CATTGCGAACCTGGTATACAGCAAACGCATGGGTAACAACGCACCCGGCGACGGCTGGTT 35483 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1032 CATTGCGAACCTGGTATACAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTT 1091 Query 35484 ATACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAACAACTACCGTGATTGTGGAAA 35543 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1092 TTACCGTGGGCGTGGGCTTATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAA 1151 Query 35544 CGGCCTGAAAGTTGATCTGGTTAAGCAACCTCAGTTGCTCGCTGAAGACGTATACGCGGC 35603 ||||||||| ||||||||||| ||||| ||| || | | || |||||||| ||||| || Sbjct 1152 CGGCCTGAAGGTTGATCTGGTAAAGCAGCCTGAGCTATTAGCCGAAGACGTTTACGCAGC 1211 Query 35604 AAGAAGTGCGGCATGGTTCTTTGTCACTAAGGGCTGCCTTAATCATTCTGGCGACCTGAT 35663 ||||| ||||| |||||||| | ||||||||| ||||| || |||| ||||||||| | Sbjct 1212 CAGAAGCGCGGCGTGGTTCTTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGACCTGCT 1271 Query 35664 GCGCGTGACGAAGATTATCAACGGCGGAACGAACGGACTGGAAGATCGTCGCGCTCGCTT 35723 || |||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 1272 GCAGGTGACGAAGATTATCAACGGCGGAACGAACGGGCTTGAAGATCGTCGTGCTCGCTT 1331 Query 35724 CGGTCAGGCCAAAACAGTACTGGTATGAGGTTGATATGGGTTTAGAAACGATAATCGGTA 35783 | |||| |||||||| |||||||| ||||||||||||||| | ||||| || || ||| Sbjct 1332 CAGTCAAGCCAAAACCGTACTGGTGTGAGGTTGATATGGGGATTGAAACAATCATTGGTC 1391 Query 35784 TTGCTGCACTTGTTATGGCTGCTATCGCTGGTGCCTTTGGCATTGGCCATTCACGCGGCA 35843 ||||||| | || |||||||||||||| ||||| ||||| ||||||||||| ||||||| Sbjct 1392 TTGCTGCCTTGGTAATGGCTGCTATCGCCGGTGCTTTTGGTATTGGCCATTCTCGCGGCA 1451 Query 35844 CCAGCAAAGCGGAAGCCAAAGCAGACCAGCAGCGCACCGAAGAAAAGGCCGCAGCCACTG 35903 |||||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||||||| Sbjct 1452 CCAGCAAAGCAGAAGCGAAAGCTGATCAGCAGCGCACTGAAGAAAAGGCAGCAGCCACTG 1511 Query 35904 AAGCAGTAGCCGAACGCCGGGTAGAAGCAACGAAAGAGGCCAGCAATGTACAGCAGACTG 35963 ||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 1512 AAGCAGTAGCCGAACACCGGGTTGAAGTAACCAAAGAGGCCAGCAATGTACAGCAGACTG 1571 Query 35964 TTAACCACATGCCTGATGACGATGTTGATCGCGAGCTGCGTGACACGTGGAAGCG 36018 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1572 TTAACCGTATGCCTGATGACGATGTTGATCGCGAGTTGCGTGACACGTGGAAGCG 1626 >seq5348 Length=1880 Score = 239 bits (264), Expect = 1e-58 Identities = 149/159 (94%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 27663 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCACGCTGGTGAAGCGTCTCTGGCTGTC 27722 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 137 CCTCGTCTCTTCCGAGGTGTCACACCTGATCGCCACGCTGGTGAAACGTCTCTGGCTGTC 196 Query 27723 GTACACAACTGTCTTGCACATTCCGGCTACCCGCTGGATCTGGATACTG--AAAGGAATC 27780 ||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 197 GTACACAACTGGCTTGCACATTCCGGCTACCCGCTGGATCGGGATACTGCCTAAGGAATC 256 Query 27781 CACGGACCGCTGCGGCACATGTGCCATATACCGTACTGC 27819 | ||||||||| ||||||||||||||||||||||||||| Sbjct 257 CCCGGACCGCTACGGCACATGTGCCATATACCGTACTGC 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127956477553296