Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq5348 401 2e-107 >seq5348 Length=1880 Score = 401 bits (444), Expect = 2e-107 Identities = 329/399 (82%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 42876 TGTTAAGATGTTTCTGATTGCAATCAATGGAAACATaaaaaatgaaaaaGGCATTGGCTT 42935 |||||||||||||| |||||||||||| ||||||| |||||||||||||| || |||| Sbjct 1566 TGTTAAGATGTTTCCGATTGCAATCAAAGGAAACA--AAAAATGAAAAAGGTTTTAGCTT 1509 Query 42936 TAGCCGCAGTAGTAATGTTGTTAGCAGGGTGTAGCTCACGCGTGGCCGATTTGACCGTGG 42995 |||| | |||||| |||| || ||||| ||||| ||||| || ||| |||| || | Sbjct 1508 TAGCTCTTGGTGTAATGATGTTGGCTGGGTGCAGCTCTCGCGTTGCGGATCTGACTGTAG 1449 Query 42996 CGAGTACCAAAAACTACAACCTCAATTCAAACAATTTCGTTAAAGGTGCTCGCGTTCAGG 43055 |||| || ||||| ||||| ||||| ||||||||||||||||||||||| |||||| | | Sbjct 1448 CGAGCACAAAAAATTACAATCTCAACTCAAACAATTTCGTTAAAGGTGCGCGCGTTAAAG 1389 Query 43056 GAGAAGACTCGGCTCCCGTGGTAATTTTCCCTCTCGGCATTCCCAATGTGAAGACTGCTA 43115 ||||||||| ||||| || || |||||||| ||||| ||||| |||||||| || || | Sbjct 1388 CAGAAGACTCTGCTCCAGTCGTGATTTTCCCGCTCGGGATTCCGAATGTGAAAACGGCCA 1329 Query 43116 TCGACAGAGCTATTGAGAAGAATCGTTGCTCAGTTGCGCTTTCTGATGTCGTTGTGACTC 43175 | || | |||||||||||||| | ||||| ||||| |||||||| || ||||| |||| Sbjct 1328 TTGATCGTGCTATTGAGAAGAACAGATGCTCTGTTGCTCTTTCTGACGTTGTTGTTACTC 1269 Query 43176 AGTTCAACCACTCTTTCCTGTTCGGCAAGTTTGGCTTCATTGTTGAAGGAACTGAGGTGA 43235 | ||||||||||||||||||||||| || || || || ||||| || ||||| || || | Sbjct 1268 AATTCAACCACTCTTTCCTGTTCGGTAAATTCGGATTTATTGTAGAGGGAACCGAAGTTA 1209 Query 43236 TTGACCGTCGCCAGCCCGGTTGCGAGAACGCGAACTAAA 43274 | || ||| | ||||| |||||||||||||||||||||| Sbjct 1208 TCGATCGTGGGCAGCCGGGTTGCGAGAACGCGAACTAAA 1170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152216086285488