Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq5535 352 7e-93 >seq5535 Length=1768 Score = 352 bits (390), Expect = 7e-93 Identities = 890/1334 (67%), Gaps = 43/1334 (3%) Strand=Plus/Minus Query 22209 AGCGGGCCCGTCTGTCGTCCAGCCCGTTCTGCCCACCGTTAATAATCTGCGTGACGCGCA 22268 |||| || || | || || ||||||||| || ||||| ||||||| ||| || ||| Sbjct 1330 AGCGAGCACGACGATCTTCAAGCCCGTTCGTTCCGCCGTTGATAATCTTCGTCACCTGCA 1271 Query 22269 GCAAATCGCCCGGATATTTCAGGCAGCCTTTGCTGGTATAGAACCATGCTGCAGATCGCG 22328 ||| ||||| | ||| |||||||| || || ||| ||||||| || || || | Sbjct 1270 GCAGGTCGCCGGAATACTTCAGGCATCCCTTAGTGGCGAAGAACCACGCCGCGCTTCTGG 1211 Query 22329 CTGCGGTGGCGTCTTTGGAAAGCAGTTCCGGCGAGCTCACAAGGTCAAGTTTCAGCGCGG 22388 ||||| |||||| || | || || ||| | || || |||| ||||| || Sbjct 1210 CTGCGTAAACGTCTTCGGCTAATAGCTCAGGCTGCTTTACCAGATCAACCTTCAGGCCGT 1151 Query 22389 CGCCGCAATCGCGGTAATTCTCGAGCCCGGTGATCTGGATGAGCCCGCGTCCGCGATATT 22448 || ||||| ||||| || | ||| ||||| |||||||| ||||| || || || || Sbjct 1150 TCCCACAATCACGGTAGTTATTGAGGCCGGTAATCTGGATAAGCCCACGCCCACGGTAAA 1091 Query 22449 TCCAGCCATCACCCGGGGCGTTATTACCGAGGCGCTTGCTGTAAACCAGATTGGCGATCG 22508 |||||| ||||| || ||||| || || | ||| |||||||| ||||| || || || | Sbjct 1090 ACCAGCCGTCACCGGGTGCGTTGTTCCCCATGCGTTTGCTGTATACCAGGTTCGCAATGG 1031 Query 22509 CGCGCTGGCGTTCAAGGGGCA--GCAC-CTTTTCATACGTGCGGCGGCCCAGCGTGTTGG 22565 |||||||||| |||| || | | | || |||| | || || || |||| ||| | Sbjct 1030 CGCGCTGGCGCTCAATCGGTAATGTTCGCTCTTCA---GGACGACGCCCAAGCGCGTTAG 974 Query 22566 CCTGATCCTGAGTTAACCGGCCAGCCCGGACAAAATCATTAAGCGCTGCGATGCTGTAGT 22625 |||| || ||| | || ||||| |||| || | | || | || |||| |||| Sbjct 973 CCTGGTCTGCAGTGAGGCGTCCAGCACGGATGAAGTTAACCAGTCCAGCAATGCGATAGT 914 Query 22626 TGAAGCTCTCTTCCAGCCTGGTAAAGCCGGTGCTTTCATGGCCGACCTGCGCGATGAACA 22685 ||||||| || | ||| || ||||| | |||||| || |||| |||||||||| Sbjct 913 TGAAGCTTTCCACGAGCAGAGTGAAGCCAGCTGATTCATGCCCTGCCTGAGCGATGAACA 854 Query 22686 TTGCCTGGTCGACCGGCGCAGTGATGCCGTAATCACGCATCGCCGCA-TCAATGTGCGGG 22744 | |||||||| |||||| ||||||||| | || ||| || || | | || || | Sbjct 853 TCGCCTGGTCTACCGGCTTGGTGATGCCGAACTCTTTCATTGCGTCACTGACTG-GCTGA 795 Query 22745 AACCAGCGCGCAGTTAAGCCGGCGCTTAAACCAGCCGCCTCCTGAAATTGTTGTTGGTTC 22804 ||||||||||||| ||| ||||||||| |||||||||| ||||||||| ||||||| Sbjct 794 AACCAGCGCGCAGCTAACTCGGCGCTTAGCCCAGCCGCCTTTTGAAATTGTGATTGGTTC 735 Query 22805 ATTCGGGCCTCAGTACCTGAAACAGGCGCGCCACGTTACCCCGGGCACGGAACACGGCGG 22864 ||| | |||||||| | | || ||| ||||| ||||| ||||| || | || ||||| | Sbjct 734 ATTAGTGCCTCAGTGCATCAACCAGACGCGCTACGTTTCCCCGAGCCCAGAGAACGGCAG 675 Query 22865 CGCAGATGATTAAGTTGATGATGACCGACGCCCAGTGTGTGTGGACGTAAAAGTCGAAGG 22924 |||| || | | ||| | | ||| |||||| | | ||| | | |||| Sbjct 674 CGCATATCAGGACGTTCACCAGCACCACAAACCAGTGCGATTCATGGTACAGGCCGAACA 615 Query 22925 CGTAGCGGAACGGTACGGACGCATACGCCAGGATAATCAGGTATGCCAGCCACGATGCCC 22984 ||| ||||| || ||| || || |||| | | | || |||| | |||| | Sbjct 614 GGTAACGGAAAGGGACGCTGGCGTATACCAGCACCGTGAAATAAGCCATCAGCGATATCA 555 Query 22985 ACCAGCGGTGACGGG---CACCGGGCTTACGGAACAGCATCAGCCTCAAAACAATGGCCG 23041 ||| || | | | ||| ||| || | | |||||| | ||| || | | Sbjct 554 GAGGGCGATGTCTCGCCCCGCCGCGCT---GGTAGAACATCAGTGCAATAACGATAACAG 498 Query 23042 AACACGTCGCCACGTTGGTCAGTACCAGCGGATCACTTATTACCATTGGTTCCCCCT-CT 23100 | | | |||| | || | |||||||||| ||||||||| | ||||| | Sbjct 497 CAGAGATAATTGCGTTTGCCATCGCACTCGGATCACTTGTTACCATTGCTGGCCCCTCCA 438 Query 23101 CCAC-----CGCTGGA-ACCACTGCGCGGGGT-----CTTGCTGGCTG---GCAAACGTC 23146 |||| ||| || | | | || | | ||||||| | |||||| Sbjct 437 CCACGTAAACGCGAGAGAATTCCAAACAGGCTACCCAAATCCTGGCTGTTAACGAACGTC 378 Query 23147 AAAATTTTAATCGTCAGCGCAGAGAGTATTACTGCCCCAAGTGCATCAAGCGGCTTGTCG 23206 | | ||||| | | || | | ||||| || || || |||||||| ||| ||||| Sbjct 377 AGCAGCTTAATAGCAATAGCGGCAACGATTACCGCGCCCAGCGCATCAAGTGGCCTGTCG 318 Query 23207 CTGTAGTGTGTCAGGCTGGCAAGCTTGGAGCCCACCAGCCCGGCACCGTAAACGCCAGCG 23266 || || ||| ||| | | ||||| | ||| || ||| ||||||| | Sbjct 317 CTATACCCCGTCCATTTGGAGAAGTAAGAGCCAAGCAGTGGAGCGCCGATAACGCCAAAG 258 Query 23267 ATGTAAGAAACAACGAAATAGGCCGCGCGCCGGATCAGCGTCAGGTCT--GCCGCGGTGG 23324 ||| | || | ||| ||| || | || | ||| | | | | |||| || | Sbjct 257 ATGAATGAGGTGATGAAGTAGCCCACCAGCTTAA--GGCGGCTGATATTAACCGCCGTAG 200 Query 23325 CAACATAAAAGACCGCACCGGCAAACGCGCCAAAAATTACGCCGTAATCTGTGCCGGTCA 23384 | || || || ||||||||||| || || ||||| | || ||||||||| |||| || Sbjct 199 CGACGTAGAACACCGCACCGGCGAATGCACCAAACACCACACCGTAATCTATGCCAGTTG 140 Query 23385 GCAGTCCATAAATGCTCGCACCAGTGAGCGCAGCACCTGCCGCGAC---AGTTCCCGAAA 23441 ||| || | ||||| || || | || | |||| ||||| || || || |||| Sbjct 139 CCAGGCCGAACATGCTGGCCCCCATCAG---ACCACCAGCCGCTACTGTCGTGCCAGAAA 83 Query 23442 CCGGATCGGACATGTAG-CCCCCTC-TATTGCTGTGCATCCTCTC-GATAAGAGGGGAAA 23498 | ||||||||||| ||| ||||||| |||||| ||| |||||||| | | |||||| || Sbjct 82 CAGGATCGGACATCTAGTCCCCCTCTTATTGCCGTGAATCCTCTCAGTGATGAGGGG-AA 24 Query 23499 TAAAAAAGGCCCGC 23512 ||||||| |||||| Sbjct 23 TAAAAAAAGCCCGC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124702451955744