Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq342 172 1e-37 seq97 158 2e-33 seq662 149 1e-30 >seq342 Length=642287 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||||| || |||||||| || ||||| ||||| || || ||||||| Sbjct 476278 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 476337 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| ||||| || || ||||| ||||| || | || || || || | Sbjct 476338 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 476397 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || ||||| ||| | | || | Sbjct 476398 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476457 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || ||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 476458 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATT 476507 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||||| || |||||||| || ||||| ||||| || || ||||||| Sbjct 475822 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 475881 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| ||||| || || ||||| ||||| || | || || || || | Sbjct 475882 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 475941 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || ||||| ||| | | || | Sbjct 475942 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476001 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 476002 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476050 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||||| || |||||||| || ||||| ||||| || || ||||||| Sbjct 476050 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 476109 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| ||||| || || ||||| ||||| || | || || || || | Sbjct 476110 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 476169 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || ||||| ||| | | || | Sbjct 476170 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476229 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 476230 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476278 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| ||||| || ||||| || || ||||| ||||| || || |||||||| Sbjct 475596 CCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGAA 475655 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| ||||| || || ||||| ||||| || | || || || || || Sbjct 475656 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475715 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || ||||| ||| | | || || Sbjct 475716 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 475775 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 475776 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| ||||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 493376 CCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAA 493435 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| ||||| || || ||||| ||||| || | || || || || || Sbjct 493436 AGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 493495 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || ||||| ||| | | || || Sbjct 493496 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACA 493555 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 493556 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || |||||||| || ||||| ||||| || || ||||| | Sbjct 493602 TACCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493661 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| ||||| || || ||||| ||||| || | || || || || | Sbjct 493662 ACAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 493721 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || ||||| ||| | | || | Sbjct 493722 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAA 493781 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 493782 CGTCCAAAGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || |||||||| || ||||| ||||| || || ||||| | Sbjct 493830 TACCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493889 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || ||||| || || || | || || || || | Sbjct 493890 AAAGGGTACGCCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGCG 493949 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 | || ||||||||||| |||||||| ||||| || || Sbjct 493950 GGATGCCTTCCTTATCCTGAATCTTAGCTTTGACCTT 493986 >seq97 Length=1148689 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || ||||| || Sbjct 999205 CCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAA 999264 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || || ||||| ||||| || | || || || || || Sbjct 999265 AGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 999324 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || ||||| ||| | | || || Sbjct 999325 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGCCTCAACA 999384 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 999385 TCCAAAGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 999431 >seq662 Length=408752 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||||||| || ||||| || || ||||| ||||| || |||||||| || Sbjct 149021 CCACCTCGCAAACGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATCGGAA 148962 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || ||||| ||||| | | || || || ||||| Sbjct 148961 AGTGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148902 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || || | | || || Sbjct 148901 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148842 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 148841 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148795 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || || || || Sbjct 148109 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148050 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || ||||| ||||| | | || || || ||||| Sbjct 148049 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 147990 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || || | | || || Sbjct 147989 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 147930 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 147929 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || || || || Sbjct 148337 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148278 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || ||||| ||||| | | || || || ||||| Sbjct 148277 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148218 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || || | | || || Sbjct 148217 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148158 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 148157 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || || || || Sbjct 148565 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148506 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || ||||| ||||| | | || || || ||||| Sbjct 148505 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148446 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || || | | || || Sbjct 148445 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148386 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 148385 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| || ||||| || || ||||| ||||| || || || || || Sbjct 148793 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148734 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || ||||| ||||| | | || || || ||||| Sbjct 148733 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148674 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || || || | | || || Sbjct 148673 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148614 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 148613 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148567 Score = 93.3 bits (102), Expect = 8e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| |||| || ||||| || || ||||| ||||| || || || || || Sbjct 44606 CCACCTCGCAAGCGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 44547 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || ||||| || | || || || || ||||| | | || || || ||||| Sbjct 44546 AGCGTCCTTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 44487 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTC 82741 ||||||||||| || |||||||| || || ||||| || Sbjct 44486 ATTCCTTCCTTGTCCTGAATCTTAGCCTTCACATTNTC 44449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981705328244232