Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq97 95.1 3e-14 seq662 89.7 1e-12 >seq97 Length=1148689 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| ||| || | || || || |||||||| ||||| || || |||| Sbjct 996780 CAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGCAAGT--- 996724 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| || ||| ||||| || || || ||||| || ||| ||| Sbjct 996723 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 996664 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || |||||||||||||| || | || || | ||||||||| Sbjct 996663 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTGTCGGATTACAAC 996604 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||| || || || |||||| | || || | || ||| Sbjct 996603 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGA 996562 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| ||| || | || || || ||||| |||||||| || || |||| Sbjct 999428 CAGATCTTTGTCAAGACCTTGACGGGCAAGACGATTACTTTGGATGTTGAGGCAAGT--- 999372 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| || ||| ||||| || || || ||||| || ||| ||| Sbjct 999371 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 999312 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || |||||||||||||| || | || | | ||||||||| Sbjct 999311 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTACAAC 999252 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||| || || || |||||| | || || | || ||| Sbjct 999251 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGA 999210 Score = 89.7 bits (98), Expect = 1e-12 Identities = 143/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| ||| || | || || || |||||||| ||||| || || |||| Sbjct 999200 CAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGCAAGT--- 999144 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| |||| || ||| ||||| || || || ||||| || ||| ||| Sbjct 999143 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 999084 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || |||||||||||||| || | || | | ||||||||| Sbjct 999083 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTACAAC 999024 Query 206350 GTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||| || || || |||||| Sbjct 999023 ATCCAGAAGGAATCGACCCTTCAC 999000 >seq662 Length=408752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || |||||||| || ||| || | | ||||||||||| ||| Sbjct 44464 AAGATTCAGGACAAGGAAGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 44523 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| || |||||||| | |||| |||||| ||||||| || || || |||||| Sbjct 44524 CAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATCCAGAAGGAATCCACCCTTCAC 44583 Query 206374 CTTGTTTTG 206382 | || ||| Sbjct 44584 TTGGTGTTG 44592 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || |||||| || | | |||||| Sbjct 147730 GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCTTGATCTTC 147789 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| || |||||||| | |||| |||||| ||||||| || || Sbjct 147790 GCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATCCAGAAGGAATCC 147849 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || || | || ||| Sbjct 147850 ACACTTCACTTGGTGCTGCGCCTGCGA 147876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181674103538648