Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq837 89.7 5e-13 >seq837 Length=329666 Score = 89.7 bits (98), Expect = 5e-13 Identities = 339/525 (65%), Gaps = 9/525 (2%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| | ||| | || || || | || |||| |||||||| | ||| ||||| Sbjct 87407 CACGGTGAACTTGATAGCATCAGCAGCTGCCTTCGTTCGAAGATAGTAAAGGCCTGTCTT 87348 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 || || || |||| | || || ||||||| | | | || ||| | Sbjct 87347 CAAGCCTAGCTGCCAGCCGTGGAAGTGCATGGATGACAGCTTGGCAGTGGTCACATCCGT 87288 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 || | || || ||||| || ||||||||||||| || || || ||||||||| Sbjct 87287 CATGTGAATGTTCAGCGACTGCGACTGATCGATGTAAACGCCTCGATCACCGGCCATGTC 87228 Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 | | || || ||| | ||||||||| | || || | ||||| |||| || | || Sbjct 87227 TAGGACAACCTTCTGCCTGATTTCCCAAACAGTCTTGTACAGCTCTTTGAGATCCTGTGG 87168 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGATCAGT 136937 | || || || || ||| ||||||| ||| | | || ||| || | Sbjct 87167 CAGGTCC---ATGTTTTGCACACTGCCGTTGTGCGCGATCAGCTGCACACGGAGTTCC-T 87112 Query 136938 CGAGTATACGTTGCTCTCT--ATGAGTTTATCGACGAGATGCTGATTTACTACTTGATAT 136995 || | || | | || ||||| | | || || || |||| ||| | | Sbjct 87111 CGT-TCCACAACCCACGCTGGATGAGATCCTTGAGCAGGTGGCGATTCACTTGCACAAAC 87053 Query 136996 TCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTG 137055 || ||||| ||||| | ||| ||||| || || ||| | |||||||| || |||||| Sbjct 87052 TCCCCCGAAAGCACCCGGCGAACGTAGAGGTTTTGCGTGTAAGGCTCGAAGGACTCGTTG 86993 Query 137056 TTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGT 137115 || |||||||||||||| || | || || |||||| || | || ||| |||||||| Sbjct 86992 TTGCCCAAAATCTGTGCTGTGCTGGCCGTGGGCATGGGTGCCACCAGCAAGGAATTCCGA 86933 Query 137116 AAACCGTGTACGGCCAATTGTTGC-TTGAGCTCTTTCCAGTTCCA 137159 | ||| | ||||| || ||| || ||| | |||||| ||| Sbjct 86932 AGCCCGAAT-CGGCCGATGCGTGCTTTCAGCGCCGTCCAGTCCCA 86889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445040499068160