Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017
-01-06] 9,688 sequences; 808,226,712 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq22 230 3e-54
seq1090 215 7e-50
seq1075 206 4e-47
seq323 141 1e-27
seq837 95.1 2e-13
>seq22
Length=1799166
Score = 230 bits (254), Expect = 3e-54
Identities = 358/503 (71%), Gaps = 18/503 (4%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| ||
Sbjct 596623 TGGGAGATGTAC-AAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCT-GG 596566
Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
||| | ||| || |||||||| || ||| ||| | ||||| || ||| | ||||
Sbjct 596565 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 596509
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
||||| | ||||| ||| || || ||||| |||||| |||||||| |||| |
Sbjct 596508 ACGTCTTGGCCTTCTTT-GCTGCTTCTGATGGAATCGTGCTGGAGAACCTCGCCGCGCAG 596450
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| | ||||| || | || ||||| | || ||||| ||||||||||||||
Sbjct 596449 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 596390
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074
|| |||||||| || || || |||||||||||||| || ||| |||||||||| |
Sbjct 596389 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCG 596330
Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133
||||| ||| ||| ||||| |||||| |||| ||||| | || | | |||||
Sbjct 596329 GAGAAAGACAGCCT-TTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCT 596271
Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193
||||| || ||||||| ||| ||| || ||| ||||||| | || |
Sbjct 596270 GTGGGCTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 596216
Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252
||||| | ||| ||||||||| | || ||| ||||||||| |||| ||||| |||
Sbjct 596215 TTTGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 596156
Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||| ||||| || ||
Sbjct 596155 AAGCGCGGCCTGATGCCGGGCCT 596133
Score = 221 bits (244), Expect = 2e-51
Identities = 356/503 (71%), Gaps = 18/503 (4%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| ||
Sbjct 589121 TGGGAGATGTAC-AAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCT-GG 589064
Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
||| | ||| || |||||||| || ||| ||| | ||||| || ||| | ||||
Sbjct 589063 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 589007
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
||||| | ||||| ||| || || || || |||||| |||||||| |||| |
Sbjct 589006 ACGTCTTGGCCTTCTTT-GCTGCATCTGACGGAATCGTGCTGGAGAACCTCGCCGCGCAG 588948
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| | ||||| || | || ||||| | || ||||| ||||||||||||||
Sbjct 588947 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 588888
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074
|| |||||||| || || || |||||||||||||| || ||| |||||||||| |
Sbjct 588887 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCA 588828
Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133
||||| | || | ||||| |||||| |||| ||||| | || | | |||||
Sbjct 588827 GAGAA-AAGCAGCCTTTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCT 588769
Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193
||||| || ||||||| ||| ||| || ||| ||||||| | || |
Sbjct 588768 GTGGGCTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 588714
Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252
||||| | ||| ||||||||| | ||| ||| ||||||||| |||| ||||| |||
Sbjct 588713 TTTGCTGCCGTGGAGGGCATCCTCTTCAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 588654
Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||| ||||| || ||
Sbjct 588653 AAGCGCGGCCTGATGCCGGGCCT 588631
>seq1090
Length=248447
Score = 215 bits (238), Expect = 7e-50
Identities = 355/503 (71%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| ||
Sbjct 61927 TGGGAGATGTAC-AAGAAGCATGAGGCTTCTTTCTGGACGGCGGAGGAGATCGACCT-GG 61984
Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
||| | ||| || |||||||| || ||| ||| | ||||| || ||| | ||||
Sbjct 61985 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 62041
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
||||| | ||||| ||| || || || || ||||| |||||||| |||| |
Sbjct 62042 ACGTCTTGGCCTTCTTT-GCTGCATCTGAAGGAATCGTACTAGAGAACCTCGCCGCGCAG 62100
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
|| | ||||| || | || ||||| | || ||||| ||||||||||||||
Sbjct 62101 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 62160
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074
|| |||||||| || || || |||||||||||||| || ||| |||||||||| |
Sbjct 62161 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCG 62220
Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133
||||| ||| ||| ||||| |||||| |||| ||||| | || | | |||||
Sbjct 62221 GAGAAAGACAGCCT-TTTCGATGCCATCCACACCATGCCGGCAGTTCAGCAGAAGGCTCT 62279
Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193
|||| || ||||||| ||| ||| || ||| ||||||| | || |
Sbjct 62280 GTGGGTTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 62334
Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252
||||| | ||| ||||||||| | || ||| ||||||||| |||| ||||| |||
Sbjct 62335 TTTGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 62394
Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||| ||||| || ||
Sbjct 62395 AAGCGCGGCCTGATGCCGGGCCT 62417
>seq1075
Length=250942
Score = 206 bits (228), Expect = 4e-47
Identities = 290/402 (72%), Gaps = 9/402 (2%)
Strand=Plus/Plus
Query 1455876 GAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGC 1455935
|||| || ||| | ||||||||||| ||||| ||| || || ||| |||||||||
Sbjct 198764 GAGCAGCACTTCGTGAAGCACGTCCTGGCCTTCTTT-GCGGCATCCGACGGCATCGTGCT 198822
Query 1455936 CGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTA 1455995
||||||||| || | | ||| || |||||| || | |||||||| || || ||
Sbjct 198823 CGAGAACCTCGCAGCGCACTTCTCGACAGAGGTGCAGATCCCAGAGGCTCGGGCCTTCTA 198882
Query 1455996 CGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACAC 1456055
|| |||||||| ||||| || |||||||| || || || ||||| || |||| |
Sbjct 198883 TGGCTTCCAGATAGCCATGGAGAACATCCATTCCGAGACATACTCTCTGTTGATTCAGCA 198942
Query 1456056 CTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGT 1456114
||| |||||||||| || |||||||| | ||| ||||| | ||||| |||| |||||
Sbjct 198943 GTACATCAAGGACCCTGTAGAGAAGGATCGCCT-TTTCGACTCCATCCACACCATGCCGG 199001
Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTT 1456174
| ||| | | ||||| ||||| || ||||||| || ||| || | ||||
Sbjct 199002 CTGTGCAGCAGAAGGCTCTGTGGGCCGTGCAGTGGATGAATCGTGAGAGCAGCTTCACT- 199060
Query 1456175 TGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG 1456233
||||| | || | |||||||| || ||||||||| | ||| ||| | |||||
Sbjct 199061 ----GAGCGCTTGGTGGCTTTTGCCGCTGTGGAGGGCATCCTCTTCAGCGGCTGCTTCTG 199116
Query 1456234 CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||| |||| ||||| |||||||||||||| ||||| || ||
Sbjct 199117 CGCCCTCTTCTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCT 199158
>seq323
Length=666680
Score = 141 bits (156), Expect = 1e-27
Identities = 206/291 (71%), Gaps = 0/291 (0%)
Strand=Plus/Minus
Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954
||||||| | |||| |||||| |||||||| || ||||| ||||| || || |||
Sbjct 306861 ATGTCGCGGAAGTTCTTCACCCATGCGACGCCGACTCTCTTCAATGCTGGGACTCCGAAG 306802
Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014
|| |||| || || ||||| ||| || | || ||| || || ||||| ||||||
Sbjct 306801 CCACAGATGTCCTCCTGCTTCCTGCTGAAGTTGCAGGATGACAGCATTGAGGGTATCTAT 306742
Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074
||||| || ||||||||||| |||||||||| | ||||| || || || | ||
Sbjct 306741 GACACCCTGAAGCAGTGCGCTTCCATCTCCAAGTCTGCCGGTGGAATTGGCGTGGCAATC 306682
Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134
|| ||||| ||| ||| ||||| | ||||| |||||||| ||| ||| |
Sbjct 306681 TCGAACGTGCGTGCCAGCGGCTCCTACATTCGCGGCACGAACGGCCACAGCAATGGCATC 306622
Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185
|| |||||||| || ||| ||||| |||||| | || || || ||| ||
Sbjct 306621 GTACCCATGCTCCGTAATTTCAACGAGACGGCGAGGTATGTGGATCAGGGC 306571
>seq837
Length=329666
Score = 95.1 bits (104), Expect = 2e-13
Identities = 148/208 (71%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCAT-GGCCTGCGCAA 262928
|| ||||||||||||||| || ||| || || ||| | | | || || || ||
Sbjct 86880 AGTGGCCGCTGGGACTGGACGGCGCTGAAAGCA-CGCATCGGCCGATTCGGGCTTCGGAA 86938
Query 262929 CTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGA 262988
|| ||||| ||||| | |||||||||||||| || | ||||| ||||||||| |||
Sbjct 86939 TTCCTTGCTGGTGGCACCCATGCCCACGGCCAGCACAGCACAGATTTTGGGCAACAACGA 86998
Query 262989 GGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTAC 263048
| | |||||| |||| ||| ||||| ||||| ||||| ||||| || |||
Sbjct 86999 GTCCTTCGAGCCTTACACGCAAAACCTCTACGTTCGCCGGGTGCTTTCGGGGGAGTTT-- 87056
Query 263049 CGTG---GTCAACCGCCACCTGGTCAAG 263073
||| || || ||||||||| |||||
Sbjct 87057 -GTGCAAGTGAATCGCCACCTGCTCAAG 87083
Score = 93.3 bits (102), Expect = 6e-13
Identities = 118/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 260024 AAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACAC-AAGGT 260082
||||||||||| |||||||||| | |||||||| ||||| | || | | | || ||
Sbjct 85839 AAGCAGTGCGCCTCCATCTCCAAGTCTGCCGGCGGAATCGGCGTGGC-GATCTCGAATGT 85897
Query 260083 GCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCAT 260142
||| || | || | ||| | |||||||| ||||| ||| ||||| ||||||||
Sbjct 85898 GCGTGCTGGCGGGTCGTACATTCGTGGCACCAATGGCCACAGCAATGGCCTCGTGCCCAT 85957
Query 260143 GCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
||| || || ||||| |||||||| |||||||| |||
Sbjct 85958 GCTCCGGAACTTCAACGAGACGGCGCGGTACGTCGATCAG 85997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176876774593456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |