Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq22 230 3e-54 seq1090 215 7e-50 seq1075 206 4e-47 seq323 141 1e-27 seq837 95.1 2e-13 >seq22 Length=1799166 Score = 230 bits (254), Expect = 3e-54 Identities = 358/503 (71%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| || Sbjct 596623 TGGGAGATGTAC-AAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCT-GG 596566 Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||| || |||||||| || ||| ||| | ||||| || ||| | |||| Sbjct 596565 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 596509 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 ||||| | ||||| ||| || || ||||| |||||| |||||||| |||| | Sbjct 596508 ACGTCTTGGCCTTCTTT-GCTGCTTCTGATGGAATCGTGCTGGAGAACCTCGCCGCGCAG 596450 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || | ||||| || | || ||||| | || ||||| |||||||||||||| Sbjct 596449 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 596390 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || |||||||| || || || |||||||||||||| || ||| |||||||||| | Sbjct 596389 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCG 596330 Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||| ||| ||| ||||| |||||| |||| ||||| | || | | ||||| Sbjct 596329 GAGAAAGACAGCCT-TTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCT 596271 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 ||||| || ||||||| ||| ||| || ||| ||||||| | || | Sbjct 596270 GTGGGCTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 596216 Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| | ||| ||||||||| | || ||| ||||||||| |||| ||||| ||| Sbjct 596215 TTTGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 596156 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| ||||| || || Sbjct 596155 AAGCGCGGCCTGATGCCGGGCCT 596133 Score = 221 bits (244), Expect = 2e-51 Identities = 356/503 (71%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| || Sbjct 589121 TGGGAGATGTAC-AAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCT-GG 589064 Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||| || |||||||| || ||| ||| | ||||| || ||| | |||| Sbjct 589063 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 589007 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 ||||| | ||||| ||| || || || || |||||| |||||||| |||| | Sbjct 589006 ACGTCTTGGCCTTCTTT-GCTGCATCTGACGGAATCGTGCTGGAGAACCTCGCCGCGCAG 588948 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || | ||||| || | || ||||| | || ||||| |||||||||||||| Sbjct 588947 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 588888 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || |||||||| || || || |||||||||||||| || ||| |||||||||| | Sbjct 588887 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCA 588828 Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||| | || | ||||| |||||| |||| ||||| | || | | ||||| Sbjct 588827 GAGAA-AAGCAGCCTTTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCT 588769 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 ||||| || ||||||| ||| ||| || ||| ||||||| | || | Sbjct 588768 GTGGGCTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 588714 Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| | ||| ||||||||| | ||| ||| ||||||||| |||| ||||| ||| Sbjct 588713 TTTGCTGCCGTGGAGGGCATCCTCTTCAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 588654 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| ||||| || || Sbjct 588653 AAGCGCGGCCTGATGCCGGGCCT 588631 >seq1090 Length=248447 Score = 215 bits (238), Expect = 7e-50 Identities = 355/503 (71%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||||| |||||| || ||| ||||| || || ||||| || |||||| ||||||| || Sbjct 61927 TGGGAGATGTAC-AAGAAGCATGAGGCTTCTTTCTGGACGGCGGAGGAGATCGACCT-GG 61984 Query 1455839 CGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 ||| | ||| || |||||||| || ||| ||| | ||||| || ||| | |||| Sbjct 61985 CGCAGGACAACAAGG---ACTGGGTGACGATGAACGAAGGCGAGCAGCACTTCGTGAAGC 62041 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 ||||| | ||||| ||| || || || || ||||| |||||||| |||| | Sbjct 62042 ACGTCTTGGCCTTCTTT-GCTGCATCTGAAGGAATCGTACTAGAGAACCTCGCCGCGCAG 62100 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || | ||||| || | || ||||| | || ||||| |||||||||||||| Sbjct 62101 TTCTCCACGGAGGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATG 62160 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || |||||||| || || || |||||||||||||| || ||| |||||||||| | Sbjct 62161 GAGAACATCCATTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCG 62220 Query 1456075 GAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||||| ||| ||| ||||| |||||| |||| ||||| | || | | ||||| Sbjct 62221 GAGAAAGACAGCCT-TTTCGATGCCATCCACACCATGCCGGCAGTTCAGCAGAAGGCTCT 62279 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||| || ||||||| ||| ||| || ||| ||||||| | || | Sbjct 62280 GTGGGTTGTGCAGTGGATGAACCGTGAGAGC-----AGCTTCACCGAGCGCTTGGTGGCT 62334 Query 1456194 TTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| | ||| ||||||||| | || ||| ||||||||| |||| ||||| ||| Sbjct 62335 TTTGCTGCCGTGGAGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAG 62394 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| ||||| || || Sbjct 62395 AAGCGCGGCCTGATGCCGGGCCT 62417 >seq1075 Length=250942 Score = 206 bits (228), Expect = 4e-47 Identities = 290/402 (72%), Gaps = 9/402 (2%) Strand=Plus/Plus Query 1455876 GAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGC 1455935 |||| || ||| | ||||||||||| ||||| ||| || || ||| ||||||||| Sbjct 198764 GAGCAGCACTTCGTGAAGCACGTCCTGGCCTTCTTT-GCGGCATCCGACGGCATCGTGCT 198822 Query 1455936 CGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTA 1455995 ||||||||| || | | ||| || |||||| || | |||||||| || || || Sbjct 198823 CGAGAACCTCGCAGCGCACTTCTCGACAGAGGTGCAGATCCCAGAGGCTCGGGCCTTCTA 198882 Query 1455996 CGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACAC 1456055 || |||||||| ||||| || |||||||| || || || ||||| || |||| | Sbjct 198883 TGGCTTCCAGATAGCCATGGAGAACATCCATTCCGAGACATACTCTCTGTTGATTCAGCA 198942 Query 1456056 CTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGT 1456114 ||| |||||||||| || |||||||| | ||| ||||| | ||||| |||| ||||| Sbjct 198943 GTACATCAAGGACCCTGTAGAGAAGGATCGCCT-TTTCGACTCCATCCACACCATGCCGG 199001 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTT 1456174 | ||| | | ||||| ||||| || ||||||| || ||| || | |||| Sbjct 199002 CTGTGCAGCAGAAGGCTCTGTGGGCCGTGCAGTGGATGAATCGTGAGAGCAGCTTCACT- 199060 Query 1456175 TGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG 1456233 ||||| | || | |||||||| || ||||||||| | ||| ||| | ||||| Sbjct 199061 ----GAGCGCTTGGTGGCTTTTGCCGCTGTGGAGGGCATCCTCTTCAGCGGCTGCTTCTG 199116 Query 1456234 CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| |||| ||||| |||||||||||||| ||||| || || Sbjct 199117 CGCCCTCTTCTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCT 199158 >seq323 Length=666680 Score = 141 bits (156), Expect = 1e-27 Identities = 206/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||||| | |||| |||||| |||||||| || ||||| ||||| || || ||| Sbjct 306861 ATGTCGCGGAAGTTCTTCACCCATGCGACGCCGACTCTCTTCAATGCTGGGACTCCGAAG 306802 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || |||| || || ||||| ||| || | || ||| || || ||||| |||||| Sbjct 306801 CCACAGATGTCCTCCTGCTTCCTGCTGAAGTTGCAGGATGACAGCATTGAGGGTATCTAT 306742 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 ||||| || ||||||||||| |||||||||| | ||||| || || || | || Sbjct 306741 GACACCCTGAAGCAGTGCGCTTCCATCTCCAAGTCTGCCGGTGGAATTGGCGTGGCAATC 306682 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 || ||||| ||| ||| ||||| | ||||| |||||||| ||| ||| | Sbjct 306681 TCGAACGTGCGTGCCAGCGGCTCCTACATTCGCGGCACGAACGGCCACAGCAATGGCATC 306622 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||||||| || ||| ||||| |||||| | || || || ||| || Sbjct 306621 GTACCCATGCTCCGTAATTTCAACGAGACGGCGAGGTATGTGGATCAGGGC 306571 >seq837 Length=329666 Score = 95.1 bits (104), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCAT-GGCCTGCGCAA 262928 || ||||||||||||||| || ||| || || ||| | | | || || || || Sbjct 86880 AGTGGCCGCTGGGACTGGACGGCGCTGAAAGCA-CGCATCGGCCGATTCGGGCTTCGGAA 86938 Query 262929 CTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGA 262988 || ||||| ||||| | |||||||||||||| || | ||||| ||||||||| ||| Sbjct 86939 TTCCTTGCTGGTGGCACCCATGCCCACGGCCAGCACAGCACAGATTTTGGGCAACAACGA 86998 Query 262989 GGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTAC 263048 | | |||||| |||| ||| ||||| ||||| ||||| ||||| || ||| Sbjct 86999 GTCCTTCGAGCCTTACACGCAAAACCTCTACGTTCGCCGGGTGCTTTCGGGGGAGTTT-- 87056 Query 263049 CGTG---GTCAACCGCCACCTGGTCAAG 263073 ||| || || ||||||||| ||||| Sbjct 87057 -GTGCAAGTGAATCGCCACCTGCTCAAG 87083 Score = 93.3 bits (102), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 260024 AAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACAC-AAGGT 260082 ||||||||||| |||||||||| | |||||||| ||||| | || | | | || || Sbjct 85839 AAGCAGTGCGCCTCCATCTCCAAGTCTGCCGGCGGAATCGGCGTGGC-GATCTCGAATGT 85897 Query 260083 GCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCAT 260142 ||| || | || | ||| | |||||||| ||||| ||| ||||| |||||||| Sbjct 85898 GCGTGCTGGCGGGTCGTACATTCGTGGCACCAATGGCCACAGCAATGGCCTCGTGCCCAT 85957 Query 260143 GCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| || || ||||| |||||||| |||||||| ||| Sbjct 85958 GCTCCGGAACTTCAACGAGACGGCGCGGTACGTCGATCAG 85997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176876774593456