Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq342 107 2e-18 seq662 96.9 4e-15 seq984 89.7 5e-13 seq465 82.4 8e-11 >seq342 Length=642287 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||||||||||| || |||||||| || || ||| | Sbjct 493841 AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGC 493900 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || ||||||| |||||||| |||||||| |||||||| Sbjct 493901 CCGTCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCC 493960 Query 134616 TTTTCTTGAATTTTTTGTTTGACC 134639 || || ||||| || ||||||| Sbjct 493961 TTATCCTGAATCTTAGCTTTGACC 493984 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || |||| | |||| ||| | ||| || ||||||||||| || |||||||| || Sbjct 493372 CTTGCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATC 493431 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || ||| | ||| || ||||| ||||| || || |||| |||||||| ||||| Sbjct 493432 CGAAAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGG 493491 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| |||||||| || || || || || ||||| ||| | ||||| | || Sbjct 493492 CGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTC 493551 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || || || || || || || || ||||| Sbjct 493552 AACATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||||||||||| || |||||||| || | ||| | Sbjct 493613 AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGC 493672 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| ||||| || |||||||| Sbjct 493673 CCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCC 493732 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| | || ||||| | ||| Sbjct 493733 TTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACGTCCAAAGTG 493792 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || || || ||||| Sbjct 493793 ATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || |||| | |||| ||| | ||| || ||||||||||| || |||||||| || Sbjct 475592 CTTGCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATC 475651 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || ||| | ||| || ||||| ||||| || || |||| |||||||| ||||| Sbjct 475652 AGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGG 475711 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || |||||||| || || || || || ||||| || | ||||| | || Sbjct 475712 TGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTC 475771 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || || || || || || || || || || || ||||| Sbjct 475772 AACGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 >seq662 Length=408752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| | ||| || ||||||||||| || |||||||||||| | Sbjct 147881 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 147822 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||| ||||| || || ||||| |||||||| || || || Sbjct 147821 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 147762 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 |||||||| || ||||| || ||| |||||| Sbjct 147761 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACC 147729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| | ||| || ||||||||||| || |||||||||||| | Sbjct 148109 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148050 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||| ||||| || || ||||| |||||||| || || || Sbjct 148049 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 147990 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 147989 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 147930 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || | || || ||||| || ||||| Sbjct 147929 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| | ||| || ||||||||||| || |||||||||||| | Sbjct 148337 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148278 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||| ||||| || || ||||| |||||||| || || || Sbjct 148277 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148218 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 148217 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148158 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || | || || ||||| || ||||| Sbjct 148157 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| | ||| || ||||||||||| || |||||||||||| | Sbjct 148565 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148506 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||| ||||| || || ||||| |||||||| || || || Sbjct 148505 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148446 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 148445 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148386 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || | || || ||||| || ||||| Sbjct 148385 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||| | ||| || ||||||||||| || |||||||||||| | Sbjct 148793 CCACCTCGCAGGCGCAGCACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAA 148734 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || | ||| ||||| || || ||||| |||||||| || || || Sbjct 148733 AGCGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGG 148674 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 148673 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACA 148614 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || | || || ||||| || ||||| Sbjct 148613 TCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | ||| || ||||||||||| || |||||||||||| || || | Sbjct 44594 CGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTTCCG 44535 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| ||||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 44534 TCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCTTCCTTG 44475 Query 134619 TCTTGAATTTT 134629 || ||||| || Sbjct 44474 TCCTGAATCTT 44464 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || |||| | |||| ||| | ||| || ||||||||||| || ||||| || || Sbjct 149025 CTTGCCACCTCGCAAACGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTATAATC 148966 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | || || ||| || | ||| ||||| || || ||||| |||||||| || || Sbjct 148965 GGAAAGTGTCCTTCCGTCCTCCAACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGG 148906 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || |||||||| || || || || || ||||| || | |||||| | || Sbjct 148905 AGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTC 148846 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || || || || | || || ||||| || ||||| Sbjct 148845 AACATCCAACGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 148795 >seq984 Length=276867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACG 134549 || || || |||| || ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 141178 CCCCTTAGACGCAGGACCAGGTGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGCAAGC 141119 Query 134550 GTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609 || | |||| || ||||| || |||||||| || | || |||||||| || || ||| Sbjct 141118 TTGAAATAGTCCTCAAGCTGCTTCCCTGCAAAGATGAGGCGTTGCTGATCCGGTGGGATG 141059 Query 134610 CCTTCTTTTTCTTG 134623 || || || || || Sbjct 141058 CCCTCCTTGTCCTG 141045 >seq465 Length=541741 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| | | ||||| ||||| ||||| || ||| |||||| | || | Sbjct 168211 AGACGCAAGATCATGTGTAAGGTGGACTCCTTCTGGATGCCGTAGTCTGACAGAGTCCGT 168152 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 |||||| ||||| | || | |||||||| |||||||||||||| || |||||| || Sbjct 168151 CCGTCGTCTAGCTGCATCCCGCCGAAAATCAAGCGCTGCTGATCGGGAGGGATGCCTACT 168092 Query 134616 TTTTCTTGAATTTTT 134630 ||| ||||||| ||| Sbjct 168091 TTTGCTTGAATCTTT 168077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505337196253760