Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq97 136 3e-27 seq342 132 4e-26 >seq97 Length=1148689 Score = 136 bits (150), Expect = 3e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| ||||| || || |||| |||||| | |||||| | || || || | Sbjct 999434 GCGATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATTACTTTGGATGTTGAGGCA 999375 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| |||| || | ||||| || || || ||||| |||||||| || ||||| Sbjct 999374 AGTGACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGAC 999315 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||| ||||| || ||||||||| | ||| |||| |||||| Sbjct 999314 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTAC 999255 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| |||||| | || ||||| |||| |||| || ||||| Sbjct 999254 AACATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGAGGCGGCAT 999202 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || |||| || ||| | || || | || || || | Sbjct 999207 CGGCATGCAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGC 999148 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||| || | ||||| || || || ||||| |||||||| || ||||| Sbjct 999147 AAGTGACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGA 999088 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || ||||||||| | ||| |||| ||||| Sbjct 999087 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTTTCGGATTA 999028 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| |||||| | || ||||| |||| ||||| || ||||| Sbjct 999027 CAACATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCTTGCGAGGCGGCAT 998974 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| || || |||| || ||| | || || | || || || | Sbjct 996787 CGGCATGCAGATCTTTGTCAAGACCTTGACGGGTAAGACGATCACCTTGGACGTTGAGGC 996728 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||| || | ||||| || || || ||||| |||||||| || ||||| Sbjct 996727 AAGTGACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGA 996668 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || ||||||||| | ||| | || ||||| Sbjct 996667 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGTACCCTGTCGGATTA 996608 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| |||||| | || ||||| |||| |||| || ||||| Sbjct 996607 CAACATCCAGAAGGAATCGACCCTTCACTTGGTGCTGCGCCTGCGAGGCGGCAT 996554 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 ||||| |||||||| |||||||| || ||||| || ||||| | || | ||| ||||| Sbjct 996927 AAAATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAG 996868 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||||||| | ||| | || ||||||||||| || ||||| |||||| | || Sbjct 996867 CAGTTGGAAGACGGCCGTACCCTGTCGGATTACAACATCCAGAAGGAATCGACCCTTCAC 996808 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||| |||| || ||||| Sbjct 996807 TTGGTGCTGCGCCTGCGAGGCGGCAT 996782 >seq342 Length=642287 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 509544 GCGATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACAATCACCTTGGATGTTGAGGCC 509485 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||| | || || | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 509484 AGCGACACCATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGAC 509425 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||| ||||| || | || ||| | ||| |||| |||||| Sbjct 509424 CAGCAGCGACTGATCTTCGCGGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCGGATTAC 509365 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| |||||| | || |||||| |||| ||||| || ||||| Sbjct 509364 AACATCCAGAAGGAATCGACCCTTCACTTGGTTCTGCGCTTGCGAGGCGGCAT 509312 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 475822 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 475763 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 475762 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 475703 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| |||| ||||||||| Sbjct 475702 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 475643 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || ||| | || ||||| |||| ||||| ||||||| Sbjct 475642 ATCCAGAAGGAATCCACCCTTCACTTGGTGCTGCGCTTGCGAGGTGGCA 475594 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| ||||| || || |||| || ||| | || || | || || || | Sbjct 548072 GCGATGCAGATCTTTGTCAAGACCTTGACGGGGAAGACGATCACCTTGGATGTTGAGGCC 548013 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | || || | ||||| || || || ||||| |||||||| || ||||| Sbjct 548012 AGTGACACCATAGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGAC 547953 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||| ||||| || ||||| ||| || ||| |||| |||||| Sbjct 547952 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGTCGTACCCTTTCGGATTAC 547893 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||| || ||||| |||||| | || ||||| |||| | || ||||||| Sbjct 547892 AACATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTTCGAGGTGGCA 547841 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 476509 GCAATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCC 476450 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| Sbjct 476449 AGTGACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGAC 476390 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||| ||||| || | || ||| | ||| |||| |||||| Sbjct 476389 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTAC 476330 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| |||||| | || ||||| |||| |||| || || || Sbjct 476329 AACATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGTAT 476277 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 476050 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 475991 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 475990 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 475931 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| |||| ||||||||| Sbjct 475930 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 475871 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | || ||||| |||| |||| || || || Sbjct 475870 ATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGTAT 475821 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 476278 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGACGTTGAGGCCAGT 476219 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 476218 GACACGATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 476159 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| |||| ||||||||| Sbjct 476158 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCTGATTACAAC 476099 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | || ||||| |||| |||| || || || Sbjct 476098 ATCCAGAAGGAATCGACCCTGCACTTGGTGCTGCGCCTGCGAGGCGGTAT 476049 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || | || || || | Sbjct 493602 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACCTTGGATGTTGAGGCCAGT 493543 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| || ||||| || Sbjct 493542 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 493483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| |||| ||||||||| Sbjct 493482 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGGCGTACCCTTTCGGATTACAAC 493423 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || ||| | || ||||| |||| ||||| || |||| Sbjct 493422 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCTTGCGAGGCGGCA 493374 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || ||| | || || || | Sbjct 493830 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACGATCACTTTGGACGTTGAGGCCAGT 493771 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 493770 GACACGATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAG 493711 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| | || ||||||||| Sbjct 493710 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAGGACGGGCGTACCCTGTCGGATTACAAC 493651 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| |||| |||| || || || Sbjct 493650 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGCGCGGCGGTAT 493601 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27062 GGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATA 27121 ||||||| || ||||| || || |||||||| || ||||| || ||||| | || | Sbjct 493984 GGTCAAAGCTAAGATTCAGGATAAGGAAGGCATCCCGCCCGACCAGCAGCGCCTGATTTT 493925 Query 27122 CGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTC 27181 ||| ||||| || |||| ||| | ||| |||| ||||||||||| || ||||| || Sbjct 493924 CGCTGGCAAGCAGCTGGAGGACGGGCGTACCCTTTCGGATTACAACATCCAGAAGGAATC 493865 Query 27182 GACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || ||||| |||| |||| || || || Sbjct 493864 CACCCTGCACTTGGTGCTGCGCCTGCGCGGCGGTAT 493829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434865731381760