Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq5535 286 9e-73 seq5348 120 8e-23 seq7456 87.8 5e-13 >seq5535 Length=1768 Score = 286 bits (316), Expect = 9e-73 Identities = 374/518 (72%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 27295 GCCATGAAAGAGTTTGGCATTATCGATCCACAACATCAGGCAATGTTCATTGCCCAGGTC 27354 || ||||||||||| ||||| | | | || | | ||||| |||||||| || |||| Sbjct 811 GCAATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCGATGTTCATCGCTCAGGCA 870 Query 27355 GGGCATGAAAGCACTGGATTCACCAGGCTGGTGGAGAATTTCAACTACAGCATTTCCGGG 27414 ||||||||| |||| ||||| ||| ||||| | |||||||| ||||| | || Sbjct 871 GGGCATGAATCAGCTGGCTTCACTCTGCTCGTGGAAAGCTTCAACTATCGCATTGCTGGA 930 Query 27415 CTGTCTGGCTTCATCCGCGCCGGGCGTATAACTCCGGACCAGGCCAGCGCACTTGGCAGG 27474 ||| | ||||||||| || || || | ||| | |||||||| | ||| ||||| | Sbjct 931 CTGGTTAACTTCATCCGTGCTGGACGCCTCACTGCAGACCAGGCTAACGCGCTTGGGCGT 990 Query 27475 AAAACATATGAGAAGTCTCTTCCCCTGGAACGCCAGCGTGCAATTGCCAATCTGGTGTAT 27534 | | ||| | | || | || |||||||| || ||||| || ||||| || Sbjct 991 CGTCCTGAAGAGCGAACATTACCGATTGAGCGCCAGCGCGCCATTGCGAACCTGGTATAC 1050 Query 27535 AGCAAGCGCTACGGTAACAATGCGCCAGGTGATGGATGGAAATACCGTGCGCGTGGACTC 27594 ||||| ||| || ||||| || || ||||| || ||| ||||||| |||||| || Sbjct 1051 AGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTTTTACCGTGGGCGTGGGCTT 1110 Query 27595 ATCGGAATCACGTTCCTCGATAACTACCGGGATTGTGGAAACGGTCTGAAGGTTGATCTG 27654 ||| || || |||| |||||||||| |||||||| ||||| ||||||||||||||| Sbjct 1111 ATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAACGGCCTGAAGGTTGATCTG 1170 Query 27655 GTAGCTAAGCCTGAACTGCTGGCACAGGATGAATACGCGGCCCGCAGCGCGGCGTGGTTC 27714 ||| ||||||| || | || | || | ||||| ||| | ||||||||||||||| Sbjct 1171 GTAAAGCAGCCTGAGCTATTAGCCGAAGACGTTTACGCAGCCAGAAGCGCGGCGTGGTTC 1230 Query 27715 TTCGCCAGTAAAGGTTGCATGAAGTACACCGGCGACATGGTGCGCGTAACGCAGATCATC 27774 ||||||| ||| || ||| ||||||| |||||||| || ||| || ||| |||| ||| Sbjct 1231 TTCGCCACTAAGGGATGCCTGAAGTATTCCGGCGACCTGCTGCAGGTGACGAAGATTATC 1290 Query 27775 AATGGCGGGCAGAACGGAATCGACGACCGGCGCGCGCG 27812 || ||||| |||||| | || || || || || || Sbjct 1291 AACGGCGGAACGAACGGGCTTGAAGATCGTCGTGCTCG 1328 >seq5348 Length=1880 Score = 120 bits (132), Expect = 8e-23 Identities = 128/166 (77%), Gaps = 15/166 (9%) Strand=Plus/Plus Query 3675 CCTCGTCTCTTCCGAGGTGTCACACCGTATCGCCAGGATGGTGAATCCCTTGTCCGTGCA 3734 |||||||||||||||||||||||||| ||||||| | ||||||| | ||| || Sbjct 137 CCTCGTCTCTTCCGAGGTGTCACACCTGATCGCCACGCTGGTGAAAC----GTCTCTGGC 192 Query 3735 TACCGTTC---ACTGACTTGCACATTCCGGCTACCCGCTCG---GGGATAAGGAACACCA 3788 | ||| | |||| ||||||||||||||||||||||| | |||||| | | | Sbjct 193 TGTCGTACACAACTGGCTTGCACATTCCGGCTACCCGCTGGATCGGGATACTG---CCTA 249 Query 3789 AGAAACCCCGCCGGACCGCTGCGACACATGTGCCATATGCCGTACT 3834 || || || |||||||||| || |||||||||||||| ||||||| Sbjct 250 AGGAATCC--CCGGACCGCTACGGCACATGTGCCATATACCGTACT 293 >seq7456 Length=1266 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40272 TGGTTCTTTGATAACAAAAAGGATGGTTGCGGGAACGTCTGGTTCATGATGATGGCGGCA 40331 |||||||| || |||||||| || | || || ||||||||||| |||||| ||||| Sbjct 1229 TGGTTCTTCGACAACAAAAAAGACAGCTGTGGCAACGTCTGGTTTATGATGGCTGCGGCC 1170 Query 40332 ATGTGGGAAGGGTGGCAAGGGCGCGC 40357 ||||||||||||||| ||||||| || Sbjct 1169 ATGTGGGAAGGGTGGAAAGGGCGGGC 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133495040296032