Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq662 102 2e-16 seq342 96.9 8e-15 seq97 95.1 3e-14 >seq662 Length=408752 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | || || || || || | Sbjct 148089 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTTCCGTCCTCCA 148031 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||||| | ||| |||||||| || || | Sbjct 148030 ACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 147971 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || | ||||| || |||| Sbjct 147970 TCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGC 147911 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 147910 CCGTCAGGGTCTTCACGAAGATCTGCAT 147883 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | || || || || || | Sbjct 148317 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTTCCGTCCTCCA 148259 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||||| | ||| |||||||| || || | Sbjct 148258 ACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 148199 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || | ||||| || |||| Sbjct 148198 TCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGC 148139 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 148138 CCGTCAGGGTCTTCACGAAGATCTGCAT 148111 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | || || || || || | Sbjct 148545 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTTCCGTCCTCCA 148487 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||||| | ||| |||||||| || || | Sbjct 148486 ACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 148427 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || | ||||| || |||| Sbjct 148426 TCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGC 148367 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 148366 CCGTCAGGGTCTTCACGAAGATCTGCAT 148339 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | || || || || || | Sbjct 148773 CAAG-TGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTCCTTCCGTCCTCCA 148715 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||||| | ||| |||||||| || || | Sbjct 148714 ACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 148655 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || | ||||| || |||| Sbjct 148654 TCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGC 148595 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 148594 CCGTCAGGGTCTTCACGAAGATCTGCAT 148567 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||| ||||||| | || || || || || | Sbjct 149001 CAAG-TGAAGGGTGGATTCCTTCTGGATGTTATAATCGGAAAGTGTCCTTCCGTCCTCCA 148943 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||||| | ||| |||||||| || || | Sbjct 148942 ACTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGA 148883 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || | ||||| || |||| Sbjct 148882 TCTTAGCCTTGACATTATCGATGGTGTCGCTGGCCTCAACATCCAACGTAATCGTCTTGC 148823 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||||||||||| |||||| Sbjct 148822 CCGTCAGGGTCTTCACGAAGATCTGCAT 148795 >seq342 Length=642287 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||||||||| | | || | || || |||| Sbjct 509335 CAAG-TGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCTA 509393 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| |||||||| || |||| Sbjct 509394 GCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGAA 509453 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | |||| | |||| ||| || || | || || || |||| Sbjct 509454 TCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAACATCCAAGGTGATTGTCTTGC 509513 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||||| || |||| |||||| Sbjct 509514 CCGTCAAGGTCTTGACAAAGATCTGCAT 509541 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || |||||||||||||| | | || | ||| || |||| Sbjct 493396 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGCCCGTCCTCTA 493454 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | || ||| |||||||| || || | Sbjct 493455 GCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGA 493514 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | |||| ||| ||| || || | || || || | Sbjct 493515 TCTTAGCCTTGACATTGTCGATCGTGTC---ACTGGCCTCAACATCCAAGGTGATCGTCT 493571 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| | ||||| || |||| |||||| Sbjct 493572 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || |||||||||||||| | | || | ||| || |||| Sbjct 493624 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGCCCGTCCTCTA 493682 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| |||||||| || || | Sbjct 493683 GCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGA 493742 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | |||| ||| ||| || || | ||| || || | Sbjct 493743 TCTTAGCCTTGACATTGTCGATCGTGTC---ACTGGCCTCAACGTCCAAAGTGATCGTCT 493799 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| | ||||| || |||| |||||| Sbjct 493800 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||||||||| | | || | || || |||| Sbjct 475616 CAAG-TGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGAAAGGGTACGGCCGTCCTCTA 475674 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| |||||||| || || | Sbjct 475675 GCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGA 475734 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | |||| ||| ||| || || | || || || | Sbjct 475735 TCTTAGCCTTGACATTATCGATCGTGTC---ACTGGCCTCAACGTCCAAGGTGATCGTCT 475791 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| | ||||| || |||| |||||| Sbjct 475792 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 >seq97 Length=1148689 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || |||||||||||||| | | || | || ||||| | Sbjct 999225 CAAG-TGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCTTCCA 999283 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| || | ||||||||| | || ||| |||||||| || || | Sbjct 999284 ACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGA 999343 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | |||| ||| ||| || || | |||||| || | Sbjct 999344 TCTTAGCCTTGACATTGTCGATCGTGTC---ACTTGCCTCAACATCCAAAGTAATCGTCT 999400 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| | ||||| || |||| |||||| Sbjct 999401 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 999431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153677579108648