Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq662 145 2e-29 seq342 120 7e-22 seq465 93.3 1e-13 seq6891 91.5 4e-13 >seq662 Length=408752 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| || | || || || | ||| Sbjct 148798 CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGTTGGATGTTGAGGCCAGCGAC 148857 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 148858 ACCATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAG 148917 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | || || |||||||| ||| ||||||||||| || Sbjct 148918 CGCTTGATCTTCGCTGGCAAGCAGTTGGAGGACGGAAGGACACTTTCCGATTATAACATC 148977 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 148978 CAGAAGGAATCCACCCTTCA-CTTG 149001 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| || | || || || | ||| Sbjct 147886 CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGTTGGATGTTGAGGCCAGCGAC 147945 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 147946 ACCATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAG 148005 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | || || |||||||| ||| |||| || ||| || Sbjct 148006 CGCTTGATCTTCGCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATC 148065 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 148066 CAGAAGGAATCCACACTTCA-CTTG 148089 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| || | || || || | ||| Sbjct 148114 CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGTTGGATGTTGAGGCCAGCGAC 148173 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 148174 ACCATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAG 148233 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | || || |||||||| ||| |||| || ||| || Sbjct 148234 CGCTTGATCTTCGCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATC 148293 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 148294 CAGAAGGAATCCACACTTCA-CTTG 148317 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| || | || || || | ||| Sbjct 148342 CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGTTGGATGTTGAGGCCAGCGAC 148401 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 148402 ACCATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAG 148461 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | || || |||||||| ||| |||| || ||| || Sbjct 148462 CGCTTGATCTTCGCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATC 148521 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 148522 CAGAAGGAATCCACACTTCA-CTTG 148545 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||| || | || || || | ||| Sbjct 148570 CAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGTTGGATGTTGAGGCCAGCGAC 148629 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 148630 ACCATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAG 148689 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||| | || || |||||||| ||| |||| || ||| || Sbjct 148690 CGCTTGATCTTCGCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATC 148749 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 148750 CAGAAGGAATCCACACTTCA-CTTG 148773 Score = 116 bits (128), Expect = 9e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| |||||||||||||| |||||||| || | ||||||||||| || Sbjct 44464 AAGATTCAGGACAAGGAAGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAG 44523 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || || |||||||| ||| |||| || ||| |||| || ||||| || || || Sbjct 44524 CAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATCCAGAAGGAATCCACCCTTCA- 44582 Query 178125 CTTG 178128 |||| Sbjct 44583 CTTG 44586 Score = 111 bits (122), Expect = 4e-19 Identities = 107/136 (79%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| |||||| || ||||| ||||| ||||||||||||||||| || | ||| Sbjct 147727 AAGGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCTTGATC 147786 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||| | || || |||||||| ||| |||| || ||| |||| || ||| Sbjct 147787 TTCGCTGGCAAGCAGTTGGAGGACGGAAGGACGCTTTCCGACTACAACATCCAGAAGGAA 147846 Query 178113 TCAACACTGCATCTTG 178128 || ||||| || |||| Sbjct 147847 TCCACACTTCA-CTTG 147861 >seq342 Length=642287 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||| | || || || | ||| Sbjct 509538 CAGATCTTTGTCAAGACCTTGACGGGCAAGACAATCACCTTGGATGTTGAGGCCAGCGAC 509479 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| ||||| ||||| || |||||||| Sbjct 509478 ACCATAGACAATGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCACCCGACCAGCAG 509419 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || ||||| || || || | || ||| | ||||| ||| || Sbjct 509418 CGACTGATCTTCGCGGGCAAGCAGCTAGAGGACGGCCGTACCCTTTCGGATTACAACATC 509359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 509358 CAGAAGGAATCGACCCTTCA-CTTGGTT 509332 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| ||||||||||| || ||||| ||||| || |||||||| || || || Sbjct 493986 AAGGTCAAAGCTAAGATTCAGGATAAGGAAGGCATCCCGCCCGACCAGCAGCGCCTGATT 493927 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| || || || | || ||| | ||||| ||| |||| || ||| Sbjct 493926 TTCGCTGGCAAGCAGCTGGAGGACGGGCGTACCCTTTCGGATTACAACATCCAGAAGGAA 493867 Query 178113 TCAACACTGCATCTTG 178128 || || ||||| |||| Sbjct 493866 TCCACCCTGCA-CTTG 493852 >seq465 Length=541741 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | || ||||| || ||||| |||||| | ||| | || || ||| | ||| Sbjct 167997 CAACTGTTTGTGAAGACGCTCACGGGAAAAGTCGTGACCTTGGATGTAGAAGGAAGCGAC 168056 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||| | ||| ||||||||| | |||| ||| |||||||| || ||||| Sbjct 168057 ACCATCGACAACTTGAAAGCAAAGATTCAAGCAAAAGTAGGCATCCCTCCCGATCAGCAG 168116 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || | || |||| ||| | ||||| || || ||| ||||||| Sbjct 168117 CGCTTGATTTTCGGCGGGATGCAGCTAGACGACGGACGGACTCT 168160 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| |||||||| || ||||| || |||||| | | | | || || || |||| Sbjct 163855 CAAATGTTCGTGAAGACACTCACGGGCAAAACGCTGATCTTGGACGTAGAGGGAAGC--- 163911 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||| | | | | ||| | ||||||||||| ||||| |||||||| || ||| Sbjct 163912 GACACCGTGGCCGAATTAAAAGCACAGATTCAGGACCGCGAAGGCATCCCTCCCGATCAG 163971 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | || |||||||| || ||| | ||||| ||| |||| | | ||| ||| Sbjct 163972 CAACGCTTGATTTTCGCCGGGAAGCAGTTGGAAGACGGACGGACGTTGTCATCTTACAAC 164031 Query 178101 GTCCAAAAAGAATCAAC 178117 | ||| |||| || || Sbjct 164032 ATTCAAGAAGAGTCCAC 164048 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || ||||| | ||||| ||| |||| | ||| | || || ||| | ||||||||| Sbjct 164416 TTTGTGAAGATGCTCACGGGACGAACGCTGACCTTGGACGTAGAAGACAGCGACACCATC 164475 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||| | ||| ||||||||| | |||| ||| | |||||| || ||||| || | Sbjct 164476 GACAACTTGAAAGCAAAGATTCAAGCAAAAGTAGGCACCCCTCCCGATCAGCAGCGCTTG 164535 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || |||||||| | ||||| || || ||| ||||||| Sbjct 164536 ATGTTCGCCGGGATGCAGCTAGACGACGGACGGACTCT 164573 >seq6891 Length=1358 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 || ||||| | ||||| ||| |||| | ||| | || || ||| | ||||||||| Sbjct 223 TTTGTGAAGATGCTCACGGGACGAACGCTGACCTTGGACGTAGAAGACAGCGACACCATC 164 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||| | ||| ||||||||| | |||| ||| | |||||| || ||||| || | Sbjct 163 GACAACTTGAAAGCAAAGATTCAAGCAAAAGTAGGCACCCCTCCCGATCAGCAGCGCTTG 104 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || |||||||| | ||||| || || ||| ||||||| Sbjct 103 ATGTTCGCCGGGATGCAGCTAGACGACGGACGGACTCT 66 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| |||||||| || ||||| || |||||| | | | | || || || |||| Sbjct 784 CAAATGTTCGTGAAGACACTCACGGGCAAAACGCTGATCTTGGACGTAGAGGGAAGC--- 728 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||| | | | | ||| | ||||||||||| ||||| |||||||| || ||| Sbjct 727 GACACCGTGGCCGAATTAAAAGCACAGATTCAGGACCGCGAAGGCATCCCTCCCGATCAG 668 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | || |||||||| || ||| | ||||| ||| |||| | | ||| ||| Sbjct 667 CAACGCTTGATTTTCGCCGGGAAGCAGTTGGAAGACGGACGGACGTTGTCATCTTACAAC 608 Query 178101 GTCCAAAAAGAATCAAC 178117 | ||| |||| || || Sbjct 607 ATTCAAGAAGAGTCCAC 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203581783855472