Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq342 141 9e-29 seq97 127 2e-24 seq662 89.7 5e-13 >seq342 Length=642287 Score = 141 bits (156), Expect = 9e-29 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | ||||| ||||| ||| |||||||| ||||| || || || Sbjct 493604 CCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAC 493663 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 493664 AGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 493723 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | ||||| || | ||| | Sbjct 493724 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCG--ATCGTGTCACTGGCCTCAA 493781 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 493782 CGTCCAAAGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || | || | ||||| ||||| ||| |||||||| ||||| || || || Sbjct 493375 GCCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 493434 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 493435 AAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 493494 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| || ||| || | || | ||||| || | ||| Sbjct 493495 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCG--ATCGTGTCACTGGCCTCA 493552 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 493553 ACATCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| ||||| || |||||||| ||||| || || || Sbjct 475824 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 475883 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 475884 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475943 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || || | ||||| || | ||| | Sbjct 475944 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCG--ATCGTGTCACTGGCCTCAA 476001 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 476002 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476050 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| ||||| || |||||||| ||||| || || || Sbjct 476052 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476111 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 476112 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476171 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || || | ||||| || | ||| | Sbjct 476172 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCG--ATCGTGTCACTGGCCTCAA 476229 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 476230 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476278 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| ||||| || |||||||| ||||| || || || Sbjct 476280 CCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGAA 476339 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 476340 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 476399 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || || | ||||| || | ||| | Sbjct 476400 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCG--ATCGTGTCACTGGCCTCAA 476457 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 476458 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476506 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| ||||| || |||||||| ||||| || || || Sbjct 547842 GCCACCTCGAAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 547901 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || | ||||||||| ||||| ||||||||||| ||||| | || Sbjct 547902 AAGGGTACGACCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 547961 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || | || || | || | | | ||||| || | ||| | Sbjct 547962 GATGCCTTCCTTGTCC-TGGATCTTAGCCTTGACATTGTCTATGGTGTCACTGGCCTCAA 548020 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 548021 CATCCAAGGTGATCGTCTTCCCCGTCAAGGTCTTGACAAAGATCTGCAT 548069 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | || | ||||| || || ||| |||||||| ||||| || || || Sbjct 475595 GCCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 475654 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 475655 AAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGG 475714 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| || ||| || || | ||||| || | ||| Sbjct 475715 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCG--ATCGTGTCACTGGCCTCA 475772 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 475773 ACGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| || || || ||||| || |||| || ||||||||||| ||||| Sbjct 509351 TCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAG 509410 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| ||||| ||||| | || | || ||||||||| ||| | || || | || Sbjct 509411 ATCAGTCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCC-TGAATCTTAGCCTTGACATT 509469 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | |||||||| | ||| || |||| || || || || ||||||| ||||| || Sbjct 509470 GTCTATGGTGTCGCTGGCCTCAACATCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGAC 509529 Query 41851 GAAAATCTGCAT 41862 || |||||||| Sbjct 509530 AAAGATCTGCAT 509541 Score = 113 bits (124), Expect = 4e-20 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | ||||| ||||| ||| |||||||| ||||| || || || Sbjct 493832 CCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAA 493891 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 493892 AGGGTACGCCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGCGGG 493951 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || ||||| ||| ||| | || |||| Sbjct 493952 ATGCCTTCCTTATCC-TGAATCTTAGCTT 493979 >seq97 Length=1148689 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | ||||| || || || |||||||| ||||| || || || Sbjct 996556 GCCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 996615 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || | ||||||||| ||||| ||||||||||| ||||| | || Sbjct 996616 CAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 996675 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| || ||| || | || | ||||| || | ||| Sbjct 996676 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCG--ATCGTGTCACTTGCCTCA 996733 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| || ||||| |||||||||| ||||| || || ||||||||| Sbjct 996734 ACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCATG 996784 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || | || | ||||| || || || |||||||| ||||| || || || Sbjct 998976 GCCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999035 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || | ||||||||| ||||| ||||||||||| ||||| | || Sbjct 999036 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999095 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| || ||| || | || | ||||| || | ||| Sbjct 999096 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCG--ATCGTGTCACTTGCCTCA 999153 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| || ||||| |||||||||| ||||| || || ||||||||| Sbjct 999154 ACGTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCATG 999204 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | ||||| || || || |||||||| ||||| || || || Sbjct 999204 GCCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 999263 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || | ||||||||| ||||| ||||||||||| ||||| | || Sbjct 999264 AAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 999323 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| || ||| || | || | ||||| || | ||| Sbjct 999324 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCG--ATCGTGTCACTTGCCTCA 999381 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 999382 ACATCCAAAGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 999431 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | ||||| || || || |||||||| ||||| || || || Sbjct 996784 GCCGCCTCGCAGGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 996843 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || | ||||||||| ||||| ||||||||||| ||||| | || Sbjct 996844 CAGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 996903 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||| |||||| Sbjct 996904 GATGCCTTCCTTGTCTTGGATTTT 996927 >seq662 Length=408752 Score = 89.7 bits (98), Expect = 5e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | || ||||||| || || ||| |||||||| ||||| |||||||| Sbjct 44607 GCCACCTCGCAAGCGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 44548 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | |||| || | ||||||||||||||| |||| |||||| ||||| | || Sbjct 44547 AAGCGTCCTTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 44488 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | ||||||||| ||| | || | ||||| Sbjct 44487 GATTCCTTCCTTGTCC-TGAATCTTAGCCTTCA 44456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462248014985600