Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq24245 109 1e-18 seq6117 107 4e-18 seq15177 86.0 1e-11 >seq24245 Length=617 Score = 109 bits (120), Expect = 1e-18 Identities = 230/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || ||||| || ||| || ||||| || | |||| ||| ||| || Sbjct 175 CAAGCGTCGACATCCGAGATGTTCGGGAAAGTACAGGCTGTTCCGCAAGTTGAATCAACA 234 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 ||||||||||||||||||||||||||||| |||||| | || || | ||||| | Sbjct 235 CCGTTTTATCCTCGTAGCCCGTATGGTGTCGCAAAATTGTATGCCCATTGGATGACGATT 294 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 ||||| || || || |||||||| |||| |||| |||| || ||||| || | Sbjct 295 AATTATCGTGAATCTTATGGAATCTTTGCTTGTAGTGGTATTTTGTTTAATCATGAATCT 354 Query 61269 CCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT--T 61326 || | || | | |||||||| || || ||||| | | || || || ||| Sbjct 355 CCGTTGCGTGGGCGCGAATTTGTGACGCGCAAGATTACTGATTCAGTCGCTAAAATTAAA 414 Query 61327 TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 61386 ||| || | | ||| | | || || || || || | ||| | || ||||| | Sbjct 415 TTA--GGACAATTAGATTGCCTTGAACTGGGCAATATGGATGCGAAACGCGACTGGGGCT 472 Query 61387 ATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAA 61427 ||||| |||| ||| |||| | ||||||| ||||||||| Sbjct 473 ATGCGAAAGAGTATGTCGAAGGTATGTGGCGCATGTTGCAA 513 >seq6117 Length=731 Score = 107 bits (118), Expect = 4e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 178 GCTAGCCCGTCTAGCTCAGT-GGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTC 120 Query 165766 GAGCCCCACGATGGGC 165781 || |||| || ||||| Sbjct 119 GATCCCCTCGGTGGGC 104 >seq15177 Length=3331 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 211 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGGGGGTTCGAGC 270 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 271 CCCTCGGTGGGC 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057482197561970