Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8878 127 2e-24 seq12789 114 2e-20 >seq8878 Length=3384 Score = 127 bits (140), Expect = 2e-24 Identities = 592/926 (64%), Gaps = 24/926 (3%) Strand=Plus/Minus Query 53714 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 || ||||| || || || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 ||| || |||||| ||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACA 53893 || || ||| | || | ||||||||||| |||| || ||||| || | |||||| Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 53894 CGAGCCTTTATTATAGATTTGTATC----TCTTTTCTCTTTCGTATAGTGTATACAATCG 53949 ||||||| || || |||| | || || ||||| | || | || | Sbjct 1842 TGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGC 1787 Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCA-ATCCAGGACATTCATCCGGACACATCAACG 54008 ||||||||| || || |||| | | | | || | | ||||| ||||| | | | Sbjct 1786 TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAAGAG 1728 Query 54009 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 54068 ||| ||||| | || | |||| ||||| || | |||||||| ||| ||| | || | Sbjct 1727 TCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGA 1668 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 | | || | | || || || || || || ||||||| | | | ||| | | | Sbjct 1667 ACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAA 1608 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT-TGTTTCC- 54186 ||||||| ||||| ||||| | || |||| || | | || || | ||||| Sbjct 1607 AGATATCAGCGTGCCAGGGTTCAAGATAGATGG-CAAAGGAAC---CCTTTCTCTTTCCA 1552 Query 54187 --TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 |||||| |||| ||||| || || | ||| | ||||| | ||| |||| | ||| Sbjct 1551 CCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCA 1492 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || || |||||||| || || |||||||| | || | || || || || Sbjct 1491 TTTGAGTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTGCA 1432 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTATCATAGA 54362 || |||| || || || | ||||| || | ||| |||| | | ||||| |||| Sbjct 1431 AGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATCGTAGA 1374 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | || | ||| || ||| |||| | || | |||||| |||||| | Sbjct 1373 TACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGG 1314 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || || || || | || || | ||| || || ||||| || | || | Sbjct 1313 GGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGT 1254 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 54541 | || ||||| || |||||||| | ||| | ||| || |||||||||| ||| | | Sbjct 1253 TATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTGAGG 1195 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | ||||||||| |||||||||||||||||| ||| | ||| ||||||||||| || Sbjct 1194 AGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCTCA 1135 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTA 54627 | || || || || || |||| ||| Sbjct 1134 AGGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq12789 Length=2278 Score = 114 bits (126), Expect = 2e-20 Identities = 395/603 (66%), Gaps = 16/603 (3%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| | |||||| || | || || |||||||| || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| |||||||| || || ||||| || ||||| ||| || || || || ||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 890 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT-GT- 24311 || || || || || || ||||||| |||||| || | | |||||||| | || Sbjct 891 GATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTT 947 Query 24312 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| |||||||||| |||||||| | || || || | | |||| || Sbjct 948 GATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTT 1007 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| | | ||| |||| | ||| | ||||| |||| || || | Sbjct 1008 GAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGTATCGATCAGGAGTGAGTAGGT 1067 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || || ||||| || || |||||| || || ||||| || | |||||||| | Sbjct 1068 CTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCAC 1127 Query 24491 CTGTACTTCTATACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 ||| | || | || || ||||| | | || || || || || ||||| ||| Sbjct 1128 CTGAATCTCAGTGCAGAAC--TTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCA 1185 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GTTTATTCCA 24607 || || || || | || || || | ||| | ||||||| || ||| | | ||| Sbjct 1186 GCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGT-TGTCATTAAGGCGCTCCCA 1244 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCT 24666 || || | ||| | | | || | ||| || |||||| |||| ||| |||| | Sbjct 1245 GTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG-T 1303 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 || ||||| ||||||||||| | || | || || | || ||||| | || || | Sbjct 1304 CCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGGT 1363 Query 24727 TTT 24729 ||| Sbjct 1364 TTT 1366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593534436687120