Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12789 266 3e-66 seq7630 127 2e-24 seq18359 114 1e-20 seq7629 86.0 6e-12 >seq12789 Length=2278 Score = 266 bits (294), Expect = 3e-66 Identities = 480/690 (70%), Gaps = 25/690 (4%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| ||| || || || ||||||| | ||| ||||| ||| |||||| Sbjct 1367 GAAAACCCTAACCGCTTTGTCATCCTCCCCATCAAGTACAACGACATCTGGAAAATGTAC 1308 Query 116651 AAAAAGGCCGA-GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAG 116709 || | | || ||| | |||||||| ||||| | ||||| ||| || | Sbjct 1307 AAGGAC-CAGATGGCTGCATTCTGGACATCTGAGGAAATCGACCTCGCCACCGATGTTAA 1249 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 |||||||||||| | || |||||||| || || ||||||||||||| ||||| || Sbjct 1248 GGACTGGGAGCGCCTTAATGACAACGAAAAGCACTTTGTCAAGCACGTGCTCGCCTTCTT 1189 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC-GCTCAGGAGGTGC 116828 ||| ||| |||||| |||||||||||||| || | | || ||| || | | || | | Sbjct 1188 CGCTGCCTCCGACGGTATCGTCAACGAGAACCTCGCCCAGAAGTTCTGCACTG-AGATTC 1130 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 ||||| ||||||| || |||||||| || || || || ||||||||| | ||||| | Sbjct 1129 AGGTGCCCGAGGCTCGCTGCTTCTATGGTTTCCAAATGATGATGGAGAACATCCACTCCG 1070 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGTG-----CGCTCTTCGGAGGAGAAGCTCCG 116943 | | || || ||| ||||| || | | | ||| | ||| | || ||| Sbjct 1069 AGACCTACTCACTCCTGATCGATACCCTCATCTCAGACCCTCAT--GAGAAAGAGTTCC- 1013 Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 | || || || | | | || || ||||| ||||||| || ||||| || || Sbjct 1012 --TCTTCAAGGCTACTGCAAACATCCCCGTCGTCACTAAGAAGGCTGATTGGGCTCTCCG 955 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||||| || | | || |||||||| |||| | || || |||||||| || || || Sbjct 954 CTGGATCAACGACC-ACAG--CGCCTTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGA 898 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 |||| ||||||| || ||| |||| | |||| || |||||||||||||| |||||||| Sbjct 897 GGGCATCTTCTTCTCCGGCTCTTTCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCAT 838 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 |||||||||||| ||| ||||||| | |||||| | || |||||| |||| |||||| Sbjct 837 GCCCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTATGCACACCGACTT 778 Query 117184 TGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGAC-CGAGCGC---GGCGCGCGTCAGGG 117239 || || | || | |||||| | || | || || | | | ||| ||| | Sbjct 777 CGCTTGCCTCCTCTACAAGCACAT----CAACAACAAGATCTCAAACGAACGCATCATCG 722 Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGC 117269 ||||| ||||| |||| || |||||||||| Sbjct 721 AGATCATCACCAACGCAGTTGCCATCGAGC 692 >seq7630 Length=872 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || || || ||||||||| | ||||| || ||| Sbjct 727 AACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGA-GCC 669 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | |||||| || || | ||||| ||||| ||||| | || Sbjct 668 ATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGA 609 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || ||||||||| || ||||| || || || |||| | ||||||| ||| || Sbjct 608 CCAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTA 549 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 548 CAACATCCAGAAGGAGTCTACCCTTCA 522 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || || || || | Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || || || ||| | || || Sbjct 436 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCA 378 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| ||||| ||||| || |||| | || || |||||||| Sbjct 377 ACAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAA 318 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| | || || || Sbjct 317 CATTCAGAAGGAGTCAACCCTCCA 294 >seq18359 Length=859 Score = 114 bits (126), Expect = 1e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | ||||| || |||| | Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGA-GCCATC 723 Query 40750 -GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| ||||| | ||||| ||||||||||| | || | Sbjct 722 TGACACCATTGAGAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATC 664 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || |||| || | ||| || || || || || |||| | ||| | | |||||||| Sbjct 663 AACAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACA 604 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 |||| ||||||||| |||| || ||| Sbjct 603 ACATTCAGAAGGAGTCCACTCTTCAT 578 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || ||||| || ||||| || || || ||||| ||||||||||| || | Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | || | || || | ||||||||||| ||||| | || || Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| |||| || || || |||| || || | | || |||| |||||| || Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || |||||| | || || || ||||| Sbjct 374 CATTCAAAAGGAGTCTACTCTCCACCTAGT 345 >seq7629 Length=3052 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||| | || ||||| || || | || || || || |||||| | || || || Sbjct 2953 GAAAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGC 2894 Query 40745 CCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | |||||| | | | ||||| | |||| || |||| ||||| || || ||||| | Sbjct 2893 CTTCCGACACCATCGAAAACG-TGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCT 2835 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || || ||||||||| || || || || |||| |||| | ||| | || Sbjct 2834 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGAT 2775 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||||| |||| || || Sbjct 2774 TACAACATCCAAAAGGAGTCCACCCTCCA 2746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515056783587440