Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq24649 87.8 1e-12 >seq24649 Length=1633 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || |||| || |||| || || || || || ||||| || ||||| || | | Sbjct 1179 GTCAATAAAGCATAGGATGCGATATTGAATGGAACCCCAAGAAAAATATCTGCACTGCGT 1238 Query 97198 TGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAG 97257 ||||||| ||| || || ||||| ||||| ||||||||||| ||| |||| ||| Sbjct 1239 TGATATAGCTGGCATGACAGCTTGCCATCGGCAACATAAAACTGGAAAAATGCATGGCAG 1298 Query 97258 GGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACA 97303 ||||||| | ||| ||||||| ||| |||||||||||| ||| Sbjct 1299 GGGGGCAGCTTCATATTTGGAATTTCTGCCACATTCCAAGCAGACA 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346677413661830