Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18359 120 3e-22 seq7630 104 2e-17 seq7629 98.7 9e-16 >seq18359 Length=859 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| ||||||||||| || ||||| | ||| | ||| || |||| Sbjct 350 GTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTA 409 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || |||| || | ||| |||||||| || || ||||| |||||| || || Sbjct 410 CTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTT 469 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | |||| |||||| | | ||||| |||| || | || || ||||| Sbjct 470 GGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGT 529 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||||||||| ||||| Sbjct 530 GAGAGTCTTTACAAAAATTTGCAT 553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||||| | ||||| || | || ||||| || ||||||||||| ||||| Sbjct 555 CCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTT 614 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | || || || || ||||| ||| | || || | ||| |||||||| || Sbjct 615 AAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGG 674 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||||| || || | || | |||||| | ||| || Sbjct 675 ATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACG 734 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || ||||| || || || || ||||| ||||| Sbjct 735 TCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7630 Length=872 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | ||| | ||||||||| | |||||||| || || ||||||||||||| Sbjct 496 TACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGC 555 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | || | || || || || || ||||| ||||||| | ||| || ||||| | Sbjct 556 TGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTG 615 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || | |||| |||||| | ||| | Sbjct 616 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAA 675 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | || || ||||| || || || || || || |||||| Sbjct 676 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 >seq7629 Length=3052 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||| | ||||||||||| || ||||| ||||| ||||||||||| || || | Sbjct 2733 TCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTACC 2792 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || || | || |||||||| ||||||| | ||| ||||| ||||| || || ||||| Sbjct 2793 GTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTT 2852 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| ||| || || || | ||||| |||||| | ||| || || | ||| | Sbjct 2853 GTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGAT 2912 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATT 118751 || || || |||| ||| || || || |||| ||| || ||||||| Sbjct 2913 AGTCTTACCAGTCAAAGTCTTGACGAAGATCTACAT-TTTTCTTCTATT 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433697059379548