Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq21116 89.7 5e-14 seq21403 87.8 2e-13 >seq21116 Length=2771 Score = 89.7 bits (98), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 14506 AGGAAATAAATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTG 14565 ||||||| | | ||||||| || | ||||||||||| || | |||||| |||| Sbjct 959 AGGAAAT---TGTAATGGCAACAGGTATTGTAAAATGGTTCAATGATTCTAAAGGTTTTG 903 Query 14566 GCTTTATCACTTCAGAAGAAGGCA---AAGATTTGTTCGCTCACTTCTCAGCAATCCAAT 14622 |||| || ||| | || |||||| ||||||||||||| || |||||||||||| || Sbjct 902 GCTTCATTACTCCTGACGAAGGCGGCGAAGATTTGTTCGCACATTTCTCAGCAATCGTAT 843 Query 14623 CTGATGGATTCAAATC 14638 || | || ||||| || Sbjct 842 CTCAAGGCTTCAAGTC 827 >seq21403 Length=3148 Score = 87.8 bits (96), Expect = 2e-13 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 14508 GAAATAAATATTATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGC 14567 |||| | ||||||||||| || || ||||||||||| || | || || ||||| Sbjct 1143 GAAAGATGTATTATGGCAACAGGTACCGTAAAATGGTTCAATGACTCCAAGGGCTTTGGT 1202 Query 14568 TTTATCACTTCAGAAGAAGGC---AAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCT 14624 ||||||||| | || || ||| | ||||||||||| ||||| || || |||||| Sbjct 1203 TTTATCACTCCTGATGATGGCGGTGAGGATTTGTTCGCCCACTTTTCCGCGATCCAAATG 1262 Query 14625 GATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGT 14671 | || ||||| | | | |||||||||||||| |||||| || Sbjct 1263 AACGGCTTCAAGACTTTGAAAGAAGGTCAAAAAGTGTCATTTGAAGT 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48440270954374