Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8878 141 2e-28 >seq8878 Length=3384 Score = 141 bits (156), Expect = 2e-28 Identities = 407/619 (66%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 248795 TTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGT 248854 || ||| | ||| ||| | ||| ||||| | ||| | ||||| || || ||| || | Sbjct 1086 TTAACTTCCGCAGAGACTGGGACTACGACTACTTCGGATTCAAGACCCTTGAGCGCTCCT 1145 Query 248855 ATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGG 248914 | | |||||| | | ||||||||||| ||| || ||||||||| | | |||| Sbjct 1146 ACTTGCTCAAAGTCAACGGCAAGATCGTTGAAAGACCCCAGCACATGCTCCTCAGAGTCT 1205 Query 248915 CTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTG 248974 | || || || |||||||| || | || | | ||||| || | | ||||| | Sbjct 1206 CAGTAGGAATCCACAAGGAAGATGTTGACTCAGCCATTGAGACTTATAACCTCATGAGCG 1265 Query 248975 AACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGC 249034 | || ||| | || ||||| ||||| || ||||||||||| |||||| ||| ||| Sbjct 1266 ACCGTTGGTTCACTCATGCTACACCCACTCTCTTCAACGCTGGTACCCCCAAGCCTCAAA 1325 Query 249035 TGAGCTCGTGCTTTCTT-CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACG 249093 ||||||| || |||||| || ||| | ||||||||| || |||| || || || || Sbjct 1326 TGAGCTCCTG-TTTCTTGCTCATGATGAAGGACGACTCTATCCACGGTATCTACGATACT 1384 Query 249094 CTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAAC 249153 || || | || |||||||| || || ||| | || || | || |||| Sbjct 1385 CTCAAGAACGTAGCACTCATTTCTAAGAGTGCTGGTGGAGTAGGACTTGCAGTTCACAAC 1444 Query 249154 ATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCC 249213 ||| |||| | || ||||| || ||||| ||||| | |||| || | ||| Sbjct 1445 ATCAGAGCTACAGGAAGCTACATAAAGGGTACCAATGGATACTCAAATGGACTCCTTCCC 1504 Query 249214 CTCCTTCGATGCTT---TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGA 249267 | || || ||| |||| || || || | | |||||| || | || Sbjct 1505 ATGCTCAGAGTCTTCAATGAG---ACAGCAAGATATGTAGACCAGGGAGGTGGAAAGAGA 1561 Query 249268 AAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGAC 249327 ||||| || || ||||| ||| | ||| |||||||| ||||| || || | || | Sbjct 1562 AAGGGTTCCTTTGCCATCTATCTTGAACCCTGGCACGCTGATATCTTTGACTATCTCCAA 1621 Query 249328 TTGAAAAAGAACAACGGCAACG-AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTG 249386 |||| |||||| | || || | || || |||| |||||| | ||| || || || Sbjct 1622 TTGAGAAAGAATCATGGTAAAGAAGAGCA-ACGAGCTCGTGACTTGTTCATGGGTCTATG 1680 Query 249387 GGTCTCCGACTTGTTCATG 249405 ||| | || ||||||||| Sbjct 1681 GGTTCCTGATTTGTTCATG 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073419446278592