Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18359 129 5e-25 seq7630 102 6e-17 >seq18359 Length=859 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG-TT 45168 || ||||| ||||| | ||||| || || ||| |||||||||||||||||||||| || Sbjct 555 CCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTT 614 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | |||| || ||||| ||||||||||| |||| | |||||| ||||| || Sbjct 615 AAGGTTCTGC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGG 673 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||||| ||| || | | | | |||| ||| || Sbjct 674 GATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAAC 733 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || || || |||||||| || |||||||| Sbjct 734 GTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7630 Length=872 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | ||| | |||||||| || || ||||||||| |||||||| ||| | Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| || ||||| || || || || || | | |||||||||||| || Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| || || ||| || | | | | |||| ||| || Sbjct 618 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACG 677 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || ||||| || || || ||||| || ||||||||||||||| Sbjct 678 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTTG 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394953771044599