Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12789 150 2e-31 seq7630 125 6e-24 seq18359 123 2e-23 seq7629 107 2e-18 seq20592 89.7 5e-13 seq18358 89.7 5e-13 >seq12789 Length=2278 Score = 150 bits (166), Expect = 2e-31 Identities = 453/688 (66%), Gaps = 11/688 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCAT-CGTTTTGGACCGTCGAAGAAGTAGA 57625 ||||| ||||| |||||||| | |||| | | | || ||||| || ||| | || Sbjct 1325 GACATCTGGAAAATGTACAAGGAC-CAGATGGCTGCATTCTGGACATCTGAGGAAATCGA 1267 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 ||| | | ||| | | || ||||| ||| || || || | | ||| | || Sbjct 1266 CCTCGCCACCGATGTTAAGGACTGGGAGCGCCTTAATGACAACGAAAAGCACTTTGTCAA 1207 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA-AA 57744 |||||| | || || ||||| || ||||| ||||| || |||||||| | | | | || Sbjct 1206 GCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGTATCGTCAACGAGAACCTCGCCCAGAA 1147 Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 | | | ||| || | || ||| | ||||| | ||||| || || || ||| || | Sbjct 1146 GTTCTGCACT-GAGATTCAGGTGCCCGAGGCTCGCTGCTTCTATGGTTTCCAAATGATGA 1088 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || || || || |||||||| | | ||| Sbjct 1087 TGGAGAACATCCACTCCGAGACCTACTCACTCCTGATCGATACCCTCATCTCAGACCCTC 1028 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | |||||| || ||||| || | | || || |||| || | |||||||| | Sbjct 1027 ATGAGAAAGAGTTCCTCTTCAAGGCTACTGCAAACATCCCCGTCGTCACTAAGAAGGCTG 968 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCG-CCACGGCCACGTTCGCCGAGAGGCTAATCGCG 57983 | ||| | || ||||| || || |||| || | ||||||||||| || | || Sbjct 967 ATTGGGCTCTCCGCTGGATCAA---CGACCACAGCGCC-TTCGCCGAGAGACTTGTTGCC 912 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAA 58042 ||||| || || || || || ||||| || ||| || ||| || | || ||| | || Sbjct 911 TTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCCA-TCTTCTGGCTCAA 853 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 |||||| ||||| |||||||||||||| || |||||||||||| || || || ||||| Sbjct 852 GAAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGG 793 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGA 58162 | | || || || || || ||||| | ||| ||||| ||| || | || Sbjct 792 TATGCACACCGACTTCGCTTGCCTCCTCTACAAGCACATCAACAACAAGATCTCAAACGA 733 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 |||||| | || || |||||| | || || || ||||| ||||| || ||| | Sbjct 732 ACGCATCATCGAGATCATCACCAACGCAGTTGCCATCGAGCTCGAGTTCGTGTGCGAGTC 673 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAAC 58250 || || |||| | |||| |||||| Sbjct 672 TCTCCCAGTGGAGCTCATCGGAATGAAC 645 >seq7630 Length=872 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| ||||| ||||| || || || || || |||||| | |||||||| || Sbjct 727 AACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCA 668 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || |||||||| || | || |||||| Sbjct 667 TCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGAC 608 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || || |||||||| || | |||||| | || | |||||||| Sbjct 607 CAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTAC 548 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| |||| || ||||| || || |||| Sbjct 547 AACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGAGGTA 496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || ||||| | || ||||| || || Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || ||||| || Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| ||||| ||| | |||||| | ||| | || || ||| Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || |||| || ||||| || || ||| Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGGTGGT 269 >seq18359 Length=859 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||||||||| || || || || ||||| ||||||| ||||| ||| Sbjct 553 ATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCC 494 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||| || || | || ||||| || Sbjct 493 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAA 434 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || | ||||| || ||| | ||||| |||||| Sbjct 433 CAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAAC 374 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || || ||||| || || || || ||||| || || ||| Sbjct 373 ATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGGT 326 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || || || || || | |||||||| || || Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||||||| ||| | || ||||| || Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || | |||||| | || | ||||| || ||| Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||||||| |||| || ||| | || || || Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGG 555 >seq7629 Length=3052 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||| | || ||||| |||||| |||| || || || |||||| | || || || || Sbjct 2952 AAAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCC 2893 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||||| || || | || |||||||||||| | || || || Sbjct 2892 TTCCGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGA 2833 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | || || || ||||| || ||||||||||| || || || ||||| Sbjct 2832 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTA 2773 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGG-GGCGGT 31420 ||||| ||||| || || || || || |||| || ||||| |||| |||||| Sbjct 2772 CAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGGCGGT 2718 >seq20592 Length=348 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||||||| |||| ||||| || || || || || ||||| || ||| | ||||||| Sbjct 179 AAACAAACATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTG 120 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || || || | |||||| ||||| | || ||||||||||| | || | Sbjct 119 AGCCATCAGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCAC 60 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| || || | | || |||||||| ||||| ||||||||| Sbjct 59 CCGATCAACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGAC 16 >seq18358 Length=408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||| |||||||||| || || || || || || || |||||| |||| ||||| | Sbjct 255 CAAATATGTAAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTCGATGTTGAGC 314 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | |||| ||||| | || |||||||||||| | || || | Sbjct 315 CATCTGACACCATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCACCTG 374 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTT 31341 |||| ||| | || || |||||||| || ||||| Sbjct 375 ACCAACAGAGACTCATTTTCGCTGGAAAGCAGTT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445625877714480