Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12789 140 4e-28 seq8878 127 3e-24 seq2561 123 3e-23 >seq12789 Length=2278 Score = 140 bits (154), Expect = 4e-28 Identities = 400/603 (66%), Gaps = 18/603 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| |||||| || | || || ||||| || || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| |||||||| || || ||||| || ||||| ||| || ||||| |||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 891 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT-- 33758 || || || || || || ||||||| ||||||||| | | |||||||| | || Sbjct 892 ATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTTG 948 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| |||||||||| |||||||| | || || || || | | || || Sbjct 949 ATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTTG 1008 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACA 33876 ||||| | | ||| |||| | ||| | || || ||||||||| || || Sbjct 1009 AAGAGGAACTCTTTCTCATGAGGGTCTG--AGATGAGGGTATCGATCAGGAGTGAGTAGG 1066 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || || ||||| || || ||| || || || ||||| || | |||||||| | Sbjct 1067 TCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCA 1126 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCATCACTGGC 33994 ||| | || || || || ||||| | | || || || || || || || ||| Sbjct 1127 CCTGAATCTCAGTGCAGAAC--TTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGC 1184 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GTTTATTCC 34053 || || || || | || || || | ||| | ||||||| || ||| | | || Sbjct 1185 AGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGT-TGTCATTAAGGCGCTCCC 1243 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCC 34112 | || || | ||| | | | || | ||| || |||||| |||| ||| |||| Sbjct 1244 AGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG- 1302 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 | || ||||| ||||||||||| | || | ||| |||| || ||||| | || || Sbjct 1303 TCCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGG 1362 Query 34173 TTT 34175 ||| Sbjct 1363 TTT 1365 >seq8878 Length=3384 Score = 127 bits (140), Expect = 3e-24 Identities = 597/931 (64%), Gaps = 34/931 (4%) Strand=Plus/Minus Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 || ||||| ||||| || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 ||| || |||||||||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || || ||| | ||| | ||||||||||| || | || ||||| || | |||||| | Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 63132 CGAGCCTTTATTATAGATTTGTATC----TCCTTTCTCTTTCGTA--TAGAGTATACAAT 63185 ||||||| || || |||| | ||||| ||||| | || | ||| | | Sbjct 1842 TGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGC 1787 Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCA-ATCTAGGACATTCATCCGGACACATCAA 63244 ||| ||||| || || |||| | | | | | | | ||||| ||||| | | Sbjct 1786 --TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAAG 1730 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 | ||| ||||| | || | |||| ||||| || | |||||||| ||| ||| | || Sbjct 1729 AGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCAT 1670 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 || | || | | || || || || || || ||||||| | | | ||| | | Sbjct 1669 GAACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTC 1610 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTT 63421 | ||||||| ||||| ||||| | || ||||| | ||| || || | || Sbjct 1609 AAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAAC------CCTTTCTCTT 1556 Query 63422 TCC---TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 ||| |||||| |||| ||||| || || | ||| | ||||| | ||| |||| | Sbjct 1555 TCCACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAG 1496 Query 63479 ACCGTTTGA-TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 || ||||| ||| ||||||||||| || |||| ||| | || | || || || Sbjct 1495 TCCATTTGAGTAT-CCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAA 1437 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTGTC 63595 || || |||| ||| || || | ||||| || | ||| |||| | | || || Sbjct 1436 CTGCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATC 1379 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 ||||| || | || || || |||| | || | |||||| |||||| | Sbjct 1378 GTAGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGG 1319 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 | || || || || || | || || | ||| || || ||||| || | Sbjct 1318 CTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCAT 1259 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACAC 63774 || || || |||||||| |||||||| | ||| | ||| || |||||||||| ||| | Sbjct 1258 GAGGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTC 1200 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATT 63834 | | ||||||||| ||||||||||| || ||| ||| | ||| | ||||||||| Sbjct 1199 TGAGGAGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGC 1140 Query 63835 TTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 || | || || || || || |||| ||| Sbjct 1139 GCTCAAGGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq2561 Length=3495 Score = 123 bits (136), Expect = 3e-23 Identities = 513/793 (65%), Gaps = 26/793 (3%) Strand=Plus/Plus Query 62736 TCAAATGGATAATTTAAGAGAATAAAC-GCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 ||||||||| | ||| || | |||| || || || || ||||| ||||| || || || Sbjct 1419 TCAAATGGA-ATTTTGAGCAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAAT 1477 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 |||||| || | ||| ||| | ||| || | | ||||| ||||| ||||||| Sbjct 1478 AGGTCTGTGCTTAAGATTTGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTAT 1537 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62914 ||||||||| ||||| | ||| || ||| | | |||||| | | || | Sbjct 1538 AATTTTATTTAGATTCTTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTA 1597 Query 62915 TC---GCCCATC--TATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 | || | || | || || || | || | |||| ||| || ||||| ||||| || Sbjct 1598 TTCTTGCTCCTCCTTCTTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGC 1657 Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 || |||| || | | | | || ||||||||||||||||| | ||| || || Sbjct 1658 TATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGT 1717 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 ||||| |||| | || |||| | || || ||||| || || || ||| | ||||| Sbjct 1718 TCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGT 1777 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63148 ||||| ||||| ||||| |||| ||| | ||| | ||| |||| | |||| Sbjct 1778 TCCAGTCTCAATTTGAGACTCTACTATCTGTCCCCAAAGCCATCGGGCCT---TAATAGT 1834 Query 63149 TTTGTATCTCCTTTC---TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCA 63205 ||| | | | | | ||| || || | ||| || || |||||||| Sbjct 1835 CTTGCGACCGCGTCCAGTGCGTTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCA 1894 Query 63206 AACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63265 | || | | || || || | |||||||| | | ||| ||| ||| | || Sbjct 1895 AGTGGTGGTGAGGCCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTC 1954 Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTAT 63324 |||| | ||| || | ||||||||||| ||||| || || || || | | ||||| Sbjct 1955 AACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAG-TCACGAGCTCTAT 2013 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATA-ATATCAGAATGC 63380 || || || || | |||||| || | |||||| | |||| || ||| ||| Sbjct 2014 TCTCTTCCTTACC---GTGGTTTTTACGCAGCTGGAGGAA-GTCATAGATGTCACTGTGC 2069 Query 63381 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63440 || || || | || | ||| | | | || | |||| || |||||||||| |||| Sbjct 2070 CATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCGCCACCCTGATCTACGTAT 2129 Query 63441 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA-TATACCATTGGT 63499 || ||||||| ||| | || | | ||| ||||| | ||||| || ||| ||||| || Sbjct 2130 CTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTTGGAGTAT-CCATTTGT 2188 Query 63500 ACCGGAGATATAG 63512 ||| ||||||| Sbjct 2189 ACCTCTGATATAG 2201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629619057874320