Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8878 138 1e-27 seq2561 131 2e-25 seq12789 118 1e-21 >seq8878 Length=3384 Score = 138 bits (152), Expect = 1e-27 Identities = 597/929 (64%), Gaps = 30/929 (3%) Strand=Plus/Minus Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 65804 || ||||| || || || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 ||| || |||||| ||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 65924 || || ||| | ||| | ||||||||||| || | || ||||| || | |||||| | Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 65925 CGAGCCTTTATTATAGATTTGTATC----TCTTTTCTCTTTCGTATAGTGTATACAATCG 65980 ||||||| || || |||| | || || ||||| | || | || | Sbjct 1842 TGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGC 1787 Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCA-ATCCAGGACATTCATCCGGACACATCAACG 66039 ||| ||||| || || |||| | | | | || | | ||||| ||||| | | | Sbjct 1786 TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAAGAG 1728 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 ||| ||||| | || | |||| ||||| || | |||||||| ||| ||| | || | Sbjct 1727 TCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGA 1668 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | || || | | || || || || || || ||||||| | | | ||| | | | Sbjct 1667 ACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAA 1608 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTTTC 66216 |||||| ||||| ||||| | || ||||| | ||| || || | |||| Sbjct 1607 AGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAAC------CCTTTCTCTTTC 1554 Query 66217 C---TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 | |||||| |||| ||||| || || | ||| | ||||| | ||| |||| | | Sbjct 1553 CACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTC 1494 Query 66274 CATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATT 66332 |||| || ||| |||||||| || || |||||||| | || | || || || | Sbjct 1493 CATTTGA-GTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACT 1435 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTATCAT 66390 | || |||| ||| || || | ||||| || | ||| |||| | | ||||| | Sbjct 1434 GCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATCGT 1377 Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 |||| || | ||| || ||| |||| | || | |||||| |||||| | Sbjct 1376 AGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCT 1317 Query 66451 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 66510 || || || || || | || || | ||| || || ||||| || | | Sbjct 1316 TGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGA 1257 Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGC 66569 | || || |||||||| |||||||| | ||| | ||| || |||||||||| ||| | Sbjct 1256 GGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTG 1198 Query 66570 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 | | ||||||||| |||||||||||||||||| ||| | ||| | ||||||||| Sbjct 1197 AGGAGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGC 1138 Query 66630 TCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 || | || || || || || |||| ||| Sbjct 1137 TCAAGGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq2561 Length=3495 Score = 131 bits (144), Expect = 2e-25 Identities = 516/795 (65%), Gaps = 30/795 (4%) Strand=Plus/Plus Query 65529 TCAAATGGATAATTTAAGAGAATAAAC-GCGTCTGCTAATCCTTGAACACCAATACCGAT 65587 ||||||||| | ||| || | |||| || || || || ||||| ||||| || || || Sbjct 1419 TCAAATGGA-ATTTTGAGCAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAAT 1477 Query 65588 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 65647 |||||| || | ||| ||| | ||| || | | ||||| ||||| ||||||| Sbjct 1478 AGGTCTGTGCTTAAGATTTGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTAT 1537 Query 65648 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 65707 ||||||||| ||||| | ||| || ||| | | |||||| | | || | Sbjct 1538 AATTTTATTTAGATTCTTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTA 1597 Query 65708 TC---GCTCATC--TATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGC 65761 | |||| || | || || || | || | |||| ||| || ||||| || || || Sbjct 1598 TTCTTGCTCCTCCTTCTTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGC 1657 Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 || |||| || | | | | || ||||||||||||||||| | ||| ||||| Sbjct 1658 TATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGT 1717 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 ||||| |||| | || |||| | || || ||||| || || || ||| | ||||| Sbjct 1718 TCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGT 1777 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 65941 ||||| ||||| ||||| |||| ||| | ||| | ||| |||| | |||| Sbjct 1778 TCCAGTCTCAATTTGAGACTCTACTATCTGTCCCCAAAGCCATCGGGCCT---TAATAGT 1834 Query 65942 TTTGTATCTCTTTTCTCTTTCGT--ATAGT----GTATACAATCGTTCGAACTCGTCTCC 65995 ||| | | || | ||| ||| | ||| | | ||| || || ||||| Sbjct 1835 CTTGCGAC-CGCGTCCAGTGCGTTCATACTCCTCGTAGAGCTT--TTCAAATTCTTCTCC 1891 Query 65996 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 66055 |||| || | || || || || | |||||||| | | ||| ||| ||| | Sbjct 1892 CCAAGTGGTGGTGAGGCCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTG 1951 Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||| | ||| || | ||||||||||| ||||| || || || | | ||| Sbjct 1952 CTCAACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCT 2011 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATA-ATATCATAAT 66171 || || || || || | |||||| || | |||||| | |||| || ||| | Sbjct 2012 ATTCTCTTCCTTACC---GTGGTTTTTACGCAGCTGGAGGAA-GTCATAGATGTCACTGT 2067 Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231 |||| || || | || | ||| | | | || | |||| || |||||||||| || Sbjct 2068 GCCATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCGCCACCCTGATCTACGT 2127 Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTG 66290 |||| ||||||| ||| | || | | ||| ||||| | || ||||| ||| ||||| Sbjct 2128 ATCTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTTGGA-GTATCCATTT 2186 Query 66291 GTCCCGGAGATATAG 66305 || || ||||||| Sbjct 2187 GTACCTCTGATATAG 2201 >seq12789 Length=2278 Score = 118 bits (130), Expect = 1e-21 Identities = 369/561 (66%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| | |||||| || | || || |||||||| || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| |||||||| || || ||||| || ||||| ||| || || || || ||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 890 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GT- 36334 || || || || || || ||||||| ||||||||| | | ||| |||| | || Sbjct 891 GATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTT 947 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| |||||||||| |||||||| | || || || | | |||| || Sbjct 948 GATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTT 1007 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||||| | | ||| |||| | ||| | ||||| |||| || || | Sbjct 1008 GAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGTATCGATCAGGAGTGAGTAGGT 1067 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || || || ||||| || || |||||| || || ||||| || | |||||||| | Sbjct 1068 CTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCAC 1127 Query 36514 CTGTACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 ||| | || || || || ||||| | | || || || || || ||||| ||| Sbjct 1128 CTGAATCTCAGTGCAGAAC--TTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCA 1185 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 || || || || | || || || | ||| | |||||||| | || | ||| Sbjct 1186 GCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTTGTCATTAAGGCGCTCCCAG 1245 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTT 36690 || || | ||| | | | || | ||| || |||||| |||| ||| |||| | Sbjct 1246 TCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG-TC 1304 Query 36691 TTTATACATATTCCAGATGTC 36711 || ||||| ||||||||||| Sbjct 1305 CTTGTACATTTTCCAGATGTC 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657965319251960