Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12789 150 3e-31 >seq12789 Length=2278 Score = 150 bits (166), Expect = 3e-31 Identities = 399/601 (66%), Gaps = 14/601 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||| |||||| || | || | |||||||| || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| |||||||| || || ||||| || ||||| ||| || || || || ||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 890 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135 ||| || || || || || ||||||||||||||||| | | |||||| ||| | Sbjct 891 GATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTT 947 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| |||||||||| |||||||| | || || || || | | || || Sbjct 948 GATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTT 1007 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAA--GTATCGATCAAAAGACTATAC 50253 ||||| | | ||| |||| | || | | || | |||||||||| || || Sbjct 1008 GAAGAGGAACTCTTTCTCATGAGGGTC--TGAGATGAGGGTATCGATCAGGAGTGAGTAG 1065 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 | || || || ||||| || || ||| || || || ||||| || | |||||||| Sbjct 1066 GTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGC 1125 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| | || || || || | || | || || || || || ||||| ||| Sbjct 1126 ACCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCA 1185 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || || || || | || || || | ||| || ||||||||| | || | ||| Sbjct 1186 GCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTTGTCATTAAGGCGCTCCCAG 1245 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTT 50492 || || | ||| | | | || | ||| || |||||| |||| ||| |||| | Sbjct 1246 TCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTG-GTC 1304 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| ||||||||||| | || | ||| |||| || ||||| | || || || Sbjct 1305 CTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGGTT 1364 Query 50553 T 50553 | Sbjct 1365 T 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718042374739160