Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8878 143 4e-29 >seq8878 Length=3384 Score = 143 bits (158), Expect = 4e-29 Identities = 589/919 (64%), Gaps = 10/919 (1%) Strand=Plus/Minus Query 71707 GCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGA 71766 || ||||| || || || | ||||| |||| | || | |||||||| || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 71767 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 71826 ||| || |||||| ||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 71827 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 71886 || || || | ||| | ||||||||||| || | || ||||| || | |||||| | Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 71887 CGAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 71945 ||||||| || | || | | || || ||||| | || | | || | ||| Sbjct 1842 TGAGCCTTCATAGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGCTTC 1784 Query 71946 GAACTCGTCTCCCCAAGCATTGTCTA-ATCCAGGACATTCATTCGGACACATCAATGACC 72004 ||||| || || || | | | | | || | | |||||| ||||| | | | || Sbjct 1783 AAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAAGAGTCC 1725 Query 72005 ACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 72064 | ||||||| || | |||| ||||| || | |||||||| ||| ||| | || || | Sbjct 1724 AGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAACA 1665 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 72124 || | | || ||||| || || || ||||||| | | | ||| | | | | Sbjct 1664 AGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAAGA 1605 Query 72125 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCT 72184 |||||| ||||| ||||| | || ||||| | ||| | || ||||||| Sbjct 1604 TATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCTCCCT 1545 Query 72185 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 72244 | |||| ||||| || || | ||| | ||||| | ||| |||| | ||||| || Sbjct 1544 GGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTTGAGT 1485 Query 72245 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTA 72304 |||||||| || || |||||||| | || | || ||| || || || |||| Sbjct 1484 ATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTGCAAGTCCTA 1425 Query 72305 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTATCATAGATGCCCTC 72362 ||| || || | ||||| || | ||| |||| | | ||||| ||||| || | Sbjct 1424 CTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATCGTAGATACCGTG 1367 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 ||| || ||| |||| | || | |||||| |||||| | || || Sbjct 1366 GATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGGTACC 1307 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482 || || || | || || | ||| || || ||||| || || || || || || Sbjct 1306 AGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTTATAAGT 1247 Query 72483 CTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 |||||| ||||| || | ||| | ||| || |||||||| | ||| | | | ||| | Sbjct 1246 CTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTGAGGAGCATGT 1188 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 |||| |||||||||||||||||| || | ||| | ||||||||| || | || | Sbjct 1187 GCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCTCAAGGGTCT 1128 Query 72602 TAAAACCAAAATAGTTGTA 72620 | || || || |||| ||| Sbjct 1127 TGAATCCGAAGTAGTCGTA 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670927631756440