Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12789 129 9e-25 >seq12789 Length=2278 Score = 129 bits (142), Expect = 9e-25 Identities = 294/430 (68%), Gaps = 13/430 (3%) Strand=Plus/Minus Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCA 125206 |||||||| || | |||||| || ||||||||||| || || | | | | |||| Sbjct 1196 GCCTTCTTCGCTGCCTCCGACGGTATCGTCAACGAGAACCTCGCCCAGAAG-TTCTGCAC 1138 Query 125207 AGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265 ||| | | || |||| ||| ||||| || || |||||||| ||||| |||||| Sbjct 1137 TGAGATTCAGGTGCCCGAGGC-TCGCTGCTTCTATGGTTTCCAAATGATGATGGAGAACA 1079 Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC 125325 | ||||| || | ||||| ||||| || | ||| || || || ||| Sbjct 1078 TCCACTCCGAGACCTACTCACTCCTGATCGATACCCTCATCTCAGACCCTCATGAGAAAG 1019 Query 125326 ACATGCTCTTTAACGCAATCG-ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTG 125384 | | ||||| || || | | | || ||||| || ||| |||||| | |||| Sbjct 1018 AGTTCCTCTTCAAGGCTACTGCAAACATCCCCGTCGTCAC-TAAGAAGGCTGATTGGGCT 960 Query 125385 ATTCGGTGGATCGATGACGACAA-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGC 125443 | || |||||| | ||| ||| | ||||| |||| ||||| || || ||||| || Sbjct 959 CTCCGCTGGATCAACGACCACAGCGCCTTCG----CCGAGAGACTTGTTGCCTTCGCAGC 904 Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCG 125502 || |||||||||||||| || || ||| ||| ||||||| ||||||||||| || | Sbjct 903 TGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGCT-CCATCTTCTGGCTCAAGAAACGTG 845 Query 125503 GACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACT 125562 | ||||||||||| ||||| | |||||||| || || || || ||||| | ||| Sbjct 844 GCCTCATGCCCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTATGCACA 785 Query 125563 GTGACTTTGC 125572 ||||| || Sbjct 784 CCGACTTCGC 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740825590350440