Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7630 118 8e-22 seq18359 114 9e-21 seq20592 109 4e-19 seq7629 95.1 9e-15 >seq7630 Length=872 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || || |||||||| || || || || |||||||||||||| Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| ||||||| | ||| |||||||| | || | | ||||||||| ||| Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||| ||| | || ||||| ||| || || Sbjct 618 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACG 677 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| ||||| || || || || || || || || |||||||| || Sbjct 678 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 >seq18359 Length=859 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| | ||| |||||||| ||||| || || || |||||||| |||||| Sbjct 555 CCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTT 614 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| ||||||| | ||| || || ||| | |||| | ||||| ||| ||| Sbjct 615 AAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGG 674 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||||| ||| || | || ||||| || || || Sbjct 675 ATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACG 734 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || || || || || |||||||||||| Sbjct 735 TCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCATA 782 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | |||| || || || || || ||||| ||||| || ||||| Sbjct 327 CCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTG 386 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | | || || || | || | | ||||| ||| ||| Sbjct 387 AGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGG 446 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| || ||| || ||| | || ||||| ||| ||| || Sbjct 447 ATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACG 506 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || || || ||||| ||||||||||||||||| Sbjct 507 TCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 >seq20592 Length=348 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 15201 TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTC 15260 |||| ||||||| |||||||| |||||| | ||||| | |||||| ||| ||| || | Sbjct 9 TTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATAC 68 Query 15261 CTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTA 15320 |||| ||||| || || ||| ||| |||| |||||||| || || |||| Sbjct 69 CTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTA 128 Query 15321 AGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||||||| |||||||| || || ||||| || || |||| ||| |||| Sbjct 129 AGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTTTG 176 >seq7629 Length=3052 Score = 95.1 bits (104), Expect = 9e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 15128 CCATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTG 15187 || || | ||||||||| | ||| | || || || |||||||| || ||||| |||||| Sbjct 2713 CCCTGACCGCCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTG 2772 Query 15188 TAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGG 15247 ||||| | |||| ||||||| || | || ||||| | || | | ||||| Sbjct 2773 TAATCAGACAAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGA 2832 Query 15248 TCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTA 15307 || || || ||||| ||||| ||| ||| ||| || |||| ||||| ||| | Sbjct 2833 TCAGGAGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAA 2892 Query 15308 TTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| | ||| || || ||||| |||| ||| || || || || | ||| ||| Sbjct 2893 GGCTCCACATCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTTT 2952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362067881846079